miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17359 5' -54 NC_004367.1 + 77605 0.66 0.941958
Target:  5'- aGCCUcCgUAGCCUCCAUUA--GGGCu -3'
miRNA:   3'- aCGGAcG-AUUGGAGGUGGUaaUCCGc -5'
17359 5' -54 NC_004367.1 + 109177 0.66 0.937113
Target:  5'- cUGUCUGCgcGCgCUCCACCcacugguuGGCa -3'
miRNA:   3'- -ACGGACGauUG-GAGGUGGuaau----CCGc -5'
17359 5' -54 NC_004367.1 + 7858 0.67 0.926122
Target:  5'- gGCUguccaucgGUUcccacggGACCUCUACCGUgAGGCGg -3'
miRNA:   3'- aCGGa-------CGA-------UUGGAGGUGGUAaUCCGC- -5'
17359 5' -54 NC_004367.1 + 1720 0.67 0.921072
Target:  5'- cGCCgucGCU-AUCUUCACCGUcgGGGUGc -3'
miRNA:   3'- aCGGa--CGAuUGGAGGUGGUAa-UCCGC- -5'
17359 5' -54 NC_004367.1 + 116186 0.67 0.90912
Target:  5'- gGaCCUGCUGAagCUCCGCCcucUGGGUu -3'
miRNA:   3'- aC-GGACGAUUg-GAGGUGGua-AUCCGc -5'
17359 5' -54 NC_004367.1 + 120702 0.67 0.902771
Target:  5'- gGgCUGCUAggugguGCaguggCCACCAggAGGCGa -3'
miRNA:   3'- aCgGACGAU------UGga---GGUGGUaaUCCGC- -5'
17359 5' -54 NC_004367.1 + 123611 0.67 0.902771
Target:  5'- gGgCUGCUAggugguGCaguggCCACCAggAGGCGa -3'
miRNA:   3'- aCgGACGAU------UGga---GGUGGUaaUCCGC- -5'
17359 5' -54 NC_004367.1 + 126520 0.67 0.902771
Target:  5'- gGgCUGCUAggugguGCaguggCCACCAggAGGCGa -3'
miRNA:   3'- aCgGACGAU------UGga---GGUGGUaaUCCGC- -5'
17359 5' -54 NC_004367.1 + 129429 0.67 0.902771
Target:  5'- gGgCUGCUAggugguGCaguggCCACCAggAGGCGa -3'
miRNA:   3'- aCgGACGAU------UGga---GGUGGUaaUCCGC- -5'
17359 5' -54 NC_004367.1 + 23129 0.67 0.896175
Target:  5'- aGaCCUGCUGAagCUCCGCCcucUGGGUu -3'
miRNA:   3'- aC-GGACGAUUg-GAGGUGGua-AUCCGc -5'
17359 5' -54 NC_004367.1 + 42132 0.68 0.867408
Target:  5'- gGCC--CUAucuGCCUCCACCA--GGGCa -3'
miRNA:   3'- aCGGacGAU---UGGAGGUGGUaaUCCGc -5'
17359 5' -54 NC_004367.1 + 121341 0.69 0.817724
Target:  5'- aGCCggGCcc-CCUCUGCCGcuUUGGGCGa -3'
miRNA:   3'- aCGGa-CGauuGGAGGUGGU--AAUCCGC- -5'
17359 5' -54 NC_004367.1 + 124250 0.69 0.817724
Target:  5'- aGCCggGCcc-CCUCUGCCGcuUUGGGCGa -3'
miRNA:   3'- aCGGa-CGauuGGAGGUGGU--AAUCCGC- -5'
17359 5' -54 NC_004367.1 + 127159 0.69 0.817724
Target:  5'- aGCCggGCcc-CCUCUGCCGcuUUGGGCGa -3'
miRNA:   3'- aCGGa-CGauuGGAGGUGGU--AAUCCGC- -5'
17359 5' -54 NC_004367.1 + 130068 0.69 0.817724
Target:  5'- aGCCggGCcc-CCUCUGCCGcuUUGGGCGa -3'
miRNA:   3'- aCGGa-CGauuGGAGGUGGU--AAUCCGC- -5'
17359 5' -54 NC_004367.1 + 56491 0.7 0.808773
Target:  5'- aGaCCUGCUGAagCUCCGCCcugUGGGUu -3'
miRNA:   3'- aC-GGACGAUUg-GAGGUGGua-AUCCGc -5'
17359 5' -54 NC_004367.1 + 62436 0.73 0.596674
Target:  5'- gUGUCUacCUAACCUCCACCAagaUGGGCc -3'
miRNA:   3'- -ACGGAc-GAUUGGAGGUGGUa--AUCCGc -5'
17359 5' -54 NC_004367.1 + 39229 0.73 0.596674
Target:  5'- gUGCCU-CUAACagcggCCACCAUUAGGUu -3'
miRNA:   3'- -ACGGAcGAUUGga---GGUGGUAAUCCGc -5'
17359 5' -54 NC_004367.1 + 35984 0.74 0.586227
Target:  5'- aGCCgggaGCacGCUUCCACCAagGGGCGg -3'
miRNA:   3'- aCGGa---CGauUGGAGGUGGUaaUCCGC- -5'
17359 5' -54 NC_004367.1 + 62796 1.09 0.00387
Target:  5'- gUGCCUGCUAACCUCCACCAUUAGGCGu -3'
miRNA:   3'- -ACGGACGAUUGGAGGUGGUAAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.