miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 176423 0.66 0.931816
Target:  5'- gGCGuACGCCGUguaccaccaaggCGACaUGGCCCucaugACGCu- -3'
miRNA:   3'- -CGC-UGCGGCA------------GCUG-ACUGGG-----UGCGcc -5'
1736 3' -58.5 NC_001347.2 + 2326 0.66 0.931816
Target:  5'- gGCGGCggaGCUGUCGcACUuuCUgCGCGCGGg -3'
miRNA:   3'- -CGCUG---CGGCAGC-UGAcuGG-GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 142429 0.66 0.931816
Target:  5'- aGUGGCGUCGgcgCGGCgu-CCgGCGuCGGg -3'
miRNA:   3'- -CGCUGCGGCa--GCUGacuGGgUGC-GCC- -5'
1736 3' -58.5 NC_001347.2 + 196520 0.66 0.926951
Target:  5'- cGCaGACGCUGaUCGAC-GAcuacuuucugcuCCC-CGCGGg -3'
miRNA:   3'- -CG-CUGCGGC-AGCUGaCU------------GGGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 161581 0.66 0.926951
Target:  5'- cGCGGCGCCGcCGGCUa---CGCGUccGGg -3'
miRNA:   3'- -CGCUGCGGCaGCUGAcuggGUGCG--CC- -5'
1736 3' -58.5 NC_001347.2 + 112751 0.66 0.926951
Target:  5'- aGUGACguGCCGcCaACUGgucguACCCACGaCGGg -3'
miRNA:   3'- -CGCUG--CGGCaGcUGAC-----UGGGUGC-GCC- -5'
1736 3' -58.5 NC_001347.2 + 37589 0.66 0.926951
Target:  5'- uUGugGUCGUCaACUGugCUGaGCGGg -3'
miRNA:   3'- cGCugCGGCAGcUGACugGGUgCGCC- -5'
1736 3' -58.5 NC_001347.2 + 99532 0.66 0.921877
Target:  5'- cGCGAUcugcgGCCGggucgcgCGGCagugacagcuugUGACCCGCGCu- -3'
miRNA:   3'- -CGCUG-----CGGCa------GCUG------------ACUGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 12727 0.66 0.921877
Target:  5'- cGCGAgaucugGCgGUUGGCUGACa-GCGUGGa -3'
miRNA:   3'- -CGCUg-----CGgCAGCUGACUGggUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 155412 0.66 0.921877
Target:  5'- uCGGCGCCGcUGAUUGAgg-ACGCGGa -3'
miRNA:   3'- cGCUGCGGCaGCUGACUgggUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 148599 0.66 0.921877
Target:  5'- aGCGGCGgCGUgacCGGCgGugCgGuCGCGGg -3'
miRNA:   3'- -CGCUGCgGCA---GCUGaCugGgU-GCGCC- -5'
1736 3' -58.5 NC_001347.2 + 113878 0.66 0.916594
Target:  5'- cGCGACcgacaacgaagGCUGUCc-CUGGCCCuGCGCGu -3'
miRNA:   3'- -CGCUG-----------CGGCAGcuGACUGGG-UGCGCc -5'
1736 3' -58.5 NC_001347.2 + 58871 0.66 0.916594
Target:  5'- aGCGgcACGCCGgagUGACcucuCCCACGCa- -3'
miRNA:   3'- -CGC--UGCGGCa--GCUGacu-GGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 126896 0.66 0.916594
Target:  5'- aCGGCgGCCGcaUCGACggcacGCaCCugGCGGg -3'
miRNA:   3'- cGCUG-CGGC--AGCUGac---UG-GGugCGCC- -5'
1736 3' -58.5 NC_001347.2 + 157590 0.66 0.916594
Target:  5'- uGCuGCGCCGUcugCGGCUcuACCCGCccgaGCGGc -3'
miRNA:   3'- -CGcUGCGGCA---GCUGAc-UGGGUG----CGCC- -5'
1736 3' -58.5 NC_001347.2 + 1341 0.66 0.916594
Target:  5'- gGCGugGgCG-CGACgGACCUGCGUc- -3'
miRNA:   3'- -CGCugCgGCaGCUGaCUGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 1566 0.66 0.916594
Target:  5'- cGCGACGCgGaCGAgUGguuucgGCaCgGCGCGGg -3'
miRNA:   3'- -CGCUGCGgCaGCUgAC------UG-GgUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 200762 0.66 0.916594
Target:  5'- --cAUGCCGUUGACguACCCGC-CGGg -3'
miRNA:   3'- cgcUGCGGCAGCUGacUGGGUGcGCC- -5'
1736 3' -58.5 NC_001347.2 + 90375 0.66 0.911103
Target:  5'- cCGGCaCC-UCGGCcGAUUCGCGCGGa -3'
miRNA:   3'- cGCUGcGGcAGCUGaCUGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 78343 0.66 0.911103
Target:  5'- cGCGugGuCCG--GGCgGACCCgGCGUGGu -3'
miRNA:   3'- -CGCugC-GGCagCUGaCUGGG-UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.