miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 73978 1.11 0.00266
Target:  5'- aGCGACGCCGUCGACUGACCCACGCGGc -3'
miRNA:   3'- -CGCUGCGGCAGCUGACUGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 172157 0.78 0.331348
Target:  5'- cGUGACGCCGUCaGugUGGgcUUCGCGCGGc -3'
miRNA:   3'- -CGCUGCGGCAG-CugACU--GGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 78378 0.74 0.519012
Target:  5'- gGCGGCGCCGUgGugggagGACCCGCG-GGc -3'
miRNA:   3'- -CGCUGCGGCAgCuga---CUGGGUGCgCC- -5'
1736 3' -58.5 NC_001347.2 + 2224 0.74 0.528196
Target:  5'- gGCGGCGUCGggGACcGugCCGCGCGc -3'
miRNA:   3'- -CGCUGCGGCagCUGaCugGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 99144 0.74 0.53744
Target:  5'- cGCGGCGCgCGUaCGcCgaGACCCgACGCGGc -3'
miRNA:   3'- -CGCUGCG-GCA-GCuGa-CUGGG-UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 175056 0.74 0.546739
Target:  5'- aGCGGCGCCGucuUCGGCgUGcauCCCgagACGCGGc -3'
miRNA:   3'- -CGCUGCGGC---AGCUG-ACu--GGG---UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 1912 0.74 0.556089
Target:  5'- gGCuGGCGCUGggcgCGguGCUG-CCCGCGCGGu -3'
miRNA:   3'- -CG-CUGCGGCa---GC--UGACuGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 105956 0.73 0.573029
Target:  5'- cGCGAgCGCagCGUCGGCgagccgcgcacGCCCGCGCGGc -3'
miRNA:   3'- -CGCU-GCG--GCAGCUGac---------UGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 156989 0.72 0.62252
Target:  5'- cGCGACcgcagucuggGCCGU-GGCUG-CCCGCGCGc -3'
miRNA:   3'- -CGCUG----------CGGCAgCUGACuGGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 128448 0.72 0.632084
Target:  5'- uGCGugGCCGUcaagcggcgCGACggcgcGCgCACGCGGg -3'
miRNA:   3'- -CGCugCGGCA---------GCUGac---UGgGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 182292 0.7 0.726593
Target:  5'- uGCGGCGUCGUugccggggCGGCUGcUCCAggucCGCGGa -3'
miRNA:   3'- -CGCUGCGGCA--------GCUGACuGGGU----GCGCC- -5'
1736 3' -58.5 NC_001347.2 + 29141 0.7 0.726593
Target:  5'- cCGAUcggGCgGUCGACUggaggcucugugGACCCuGCGCGGg -3'
miRNA:   3'- cGCUG---CGgCAGCUGA------------CUGGG-UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 182858 0.7 0.733028
Target:  5'- cGCG-CGCCGugggaUCGGCUucgagaucgagcugGGCCuCGCGCGGc -3'
miRNA:   3'- -CGCuGCGGC-----AGCUGA--------------CUGG-GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 39077 0.7 0.735775
Target:  5'- cGCGcccACGCCGUucaucUGGCUGcgcggcgucACCCGCGCGu -3'
miRNA:   3'- -CGC---UGCGGCA-----GCUGAC---------UGGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 77518 0.7 0.735775
Target:  5'- cGCGugGCCGagGAgUGGaaguUgCACGCGGc -3'
miRNA:   3'- -CGCugCGGCagCUgACU----GgGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 130794 0.7 0.744877
Target:  5'- aUGACGCCGUCGcCUu-CUCACgGCGGc -3'
miRNA:   3'- cGCUGCGGCAGCuGAcuGGGUG-CGCC- -5'
1736 3' -58.5 NC_001347.2 + 124957 0.7 0.748495
Target:  5'- uGCGGCGCCGacuccuuguagcgcCGACggugaGACCCGCGUcccuGGg -3'
miRNA:   3'- -CGCUGCGGCa-------------GCUGa----CUGGGUGCG----CC- -5'
1736 3' -58.5 NC_001347.2 + 189133 0.7 0.753894
Target:  5'- -gGAgGCCGUCGACU---CCACGCGc -3'
miRNA:   3'- cgCUgCGGCAGCUGAcugGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 153768 0.7 0.753894
Target:  5'- cGCGccaguGCGCCGUCGACgccGCUCAggcCGUGGu -3'
miRNA:   3'- -CGC-----UGCGGCAGCUGac-UGGGU---GCGCC- -5'
1736 3' -58.5 NC_001347.2 + 196440 0.7 0.761929
Target:  5'- gGCGAUccgccaccucacgGCCGgCGACgUGGCCCGCGUccaGGa -3'
miRNA:   3'- -CGCUG-------------CGGCaGCUG-ACUGGGUGCG---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.