miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 115944 0.7 0.771638
Target:  5'- --aACGCCGUCGAauauaGGCCCACGUc- -3'
miRNA:   3'- cgcUGCGGCAGCUga---CUGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 209860 0.69 0.780351
Target:  5'- cGCGugGCCGUCuGGCUcacGAcguugcuuuccuCCCA-GCGGg -3'
miRNA:   3'- -CGCugCGGCAG-CUGA---CU------------GGGUgCGCC- -5'
1736 3' -58.5 NC_001347.2 + 88603 0.69 0.780351
Target:  5'- gGCGAC-CUGagCGGCggcGGCCUGCGCGGc -3'
miRNA:   3'- -CGCUGcGGCa-GCUGa--CUGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 189528 0.69 0.788948
Target:  5'- gGC-ACGCCGUCGACgGuACCCgccACGCu- -3'
miRNA:   3'- -CGcUGCGGCAGCUGaC-UGGG---UGCGcc -5'
1736 3' -58.5 NC_001347.2 + 128782 0.69 0.797421
Target:  5'- aGCGACGgCGgccauggaGCUGcACUCACGCGGc -3'
miRNA:   3'- -CGCUGCgGCagc-----UGAC-UGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 100190 0.69 0.813969
Target:  5'- cGCGGCGCCG-CGGCcucGCCCAgGUa- -3'
miRNA:   3'- -CGCUGCGGCaGCUGac-UGGGUgCGcc -5'
1736 3' -58.5 NC_001347.2 + 74140 0.69 0.813969
Target:  5'- aGCGACGgCGUCG-CU--CCCACcCGGg -3'
miRNA:   3'- -CGCUGCgGCAGCuGAcuGGGUGcGCC- -5'
1736 3' -58.5 NC_001347.2 + 39341 0.69 0.813969
Target:  5'- aGgGGCGCC--CGGC-GGCCCGCGgGGu -3'
miRNA:   3'- -CgCUGCGGcaGCUGaCUGGGUGCgCC- -5'
1736 3' -58.5 NC_001347.2 + 184931 0.69 0.813969
Target:  5'- cGCGACacaGCCGUCugcaGCUcgucGGCCgGCGUGGg -3'
miRNA:   3'- -CGCUG---CGGCAGc---UGA----CUGGgUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 2100 0.69 0.819628
Target:  5'- aCGGCGCCGcCGGCgggGGCgCgauuugcgugccuaACGCGGa -3'
miRNA:   3'- cGCUGCGGCaGCUGa--CUGgG--------------UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 38319 0.69 0.821231
Target:  5'- gGCGGCGCCGUaCGGCUGcggaggcACaggUACaGCGGa -3'
miRNA:   3'- -CGCUGCGGCA-GCUGAC-------UGg--GUG-CGCC- -5'
1736 3' -58.5 NC_001347.2 + 130231 0.68 0.829941
Target:  5'- uGCGGCGCUGUCucgGAcCUGAUCCuagGCGCc- -3'
miRNA:   3'- -CGCUGCGGCAG---CU-GACUGGG---UGCGcc -5'
1736 3' -58.5 NC_001347.2 + 228723 0.68 0.829941
Target:  5'- cGCcacCGCCG-CGGCgGAuuUCCGCGCGGg -3'
miRNA:   3'- -CGcu-GCGGCaGCUGaCU--GGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 159480 0.68 0.829941
Target:  5'- uCGGCGCgG-CGGCUGcugaACUCGCGCGa -3'
miRNA:   3'- cGCUGCGgCaGCUGAC----UGGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 177751 0.68 0.829941
Target:  5'- uCGACGCCGagGGCcucucagGACUUGCGCGa -3'
miRNA:   3'- cGCUGCGGCagCUGa------CUGGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 136477 0.68 0.837695
Target:  5'- gGCGACccucCCG-CGGgccCUGGCCCGCGCa- -3'
miRNA:   3'- -CGCUGc---GGCaGCU---GACUGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 222443 0.68 0.845285
Target:  5'- uCGAgGCCGaUCGACUG-CCgCAUgagaGCGGg -3'
miRNA:   3'- cGCUgCGGC-AGCUGACuGG-GUG----CGCC- -5'
1736 3' -58.5 NC_001347.2 + 88076 0.68 0.845285
Target:  5'- aCGGCGCUGUC--CUGACuuuCCGCGCGc -3'
miRNA:   3'- cGCUGCGGCAGcuGACUG---GGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 65228 0.68 0.852706
Target:  5'- aCGACcuguGCCG-CGGCUacGACCuCACGCGa -3'
miRNA:   3'- cGCUG----CGGCaGCUGA--CUGG-GUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 65855 0.68 0.852706
Target:  5'- gGCaGCGCCaG-CGGCUGGCCuucggcacgCugGCGGg -3'
miRNA:   3'- -CGcUGCGG-CaGCUGACUGG---------GugCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.