miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 1032 0.67 0.905985
Target:  5'- aCGACGCCGggccaCGGCguccaccggguagaACCC-CGCGGg -3'
miRNA:   3'- cGCUGCGGCa----GCUGac------------UGGGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 107026 0.67 0.905406
Target:  5'- cGCGGCuuCCGUCG-CUGAUaC-CGCGGa -3'
miRNA:   3'- -CGCUGc-GGCAGCuGACUGgGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 63225 0.67 0.905406
Target:  5'- cGCuGACGCUGUUuACgccGGCCUcCGCGGc -3'
miRNA:   3'- -CG-CUGCGGCAGcUGa--CUGGGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 185546 0.67 0.905406
Target:  5'- cGCGAUugGCCGUCGGCg--UCCGCaGuCGGg -3'
miRNA:   3'- -CGCUG--CGGCAGCUGacuGGGUG-C-GCC- -5'
1736 3' -58.5 NC_001347.2 + 114722 0.67 0.899505
Target:  5'- cCGACGCCuUCGA--GAUCCA-GCGGa -3'
miRNA:   3'- cGCUGCGGcAGCUgaCUGGGUgCGCC- -5'
1736 3' -58.5 NC_001347.2 + 175330 0.67 0.898903
Target:  5'- cCGuCGCCGUC-ACUGccaccgacauggaGCCCACGCc- -3'
miRNA:   3'- cGCuGCGGCAGcUGAC-------------UGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 78695 0.67 0.895866
Target:  5'- cGCGGCGCCcuuccGUCcGCUGGCgguggaagacaaccgCCugGUGGc -3'
miRNA:   3'- -CGCUGCGG-----CAGcUGACUG---------------GGugCGCC- -5'
1736 3' -58.5 NC_001347.2 + 1762 0.67 0.895866
Target:  5'- uGCaGACGCCGggcaggCGACUGcaGCCgaugguacugcugggCGCGUGGc -3'
miRNA:   3'- -CG-CUGCGGCa-----GCUGAC--UGG---------------GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 82216 0.67 0.893401
Target:  5'- cGCGuucCGCgGUauGCgUGACCaCACGCGGc -3'
miRNA:   3'- -CGCu--GCGgCAgcUG-ACUGG-GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 196232 0.67 0.893401
Target:  5'- cGCGA-GCCGaagCGGCauugaagGACCUcuACGCGGc -3'
miRNA:   3'- -CGCUgCGGCa--GCUGa------CUGGG--UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 135604 0.67 0.893401
Target:  5'- cCGuCGUCGUCGGCcGACCgC-CGCGa -3'
miRNA:   3'- cGCuGCGGCAGCUGaCUGG-GuGCGCc -5'
1736 3' -58.5 NC_001347.2 + 156638 0.67 0.880596
Target:  5'- gGCGGCGCCGcugccgggccUCGGCcGccgccgccACCCAUgGCGGc -3'
miRNA:   3'- -CGCUGCGGC----------AGCUGaC--------UGGGUG-CGCC- -5'
1736 3' -58.5 NC_001347.2 + 197736 0.67 0.880596
Target:  5'- cGCGACGCCGaCGGCcagGucAUCCGCGaguCGGc -3'
miRNA:   3'- -CGCUGCGGCaGCUGa--C--UGGGUGC---GCC- -5'
1736 3' -58.5 NC_001347.2 + 17126 0.67 0.880596
Target:  5'- uCGucCGCCGUCGGCcGccGCCCAUGCc- -3'
miRNA:   3'- cGCu-GCGGCAGCUGaC--UGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 25322 0.67 0.871858
Target:  5'- gGCGAC-CCGcagucuggcuugggUCGACUGuugCCGCGUGGc -3'
miRNA:   3'- -CGCUGcGGC--------------AGCUGACug-GGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 31665 0.68 0.86702
Target:  5'- -aGugGCUcggGUCGGCUGgucggGCCguCGCGGa -3'
miRNA:   3'- cgCugCGG---CAGCUGAC-----UGGguGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 36437 0.68 0.86702
Target:  5'- gGCGGCGCggucCGUCGA--GACCggcggACGCGGa -3'
miRNA:   3'- -CGCUGCG----GCAGCUgaCUGGg----UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 120000 0.68 0.86702
Target:  5'- uCGACGCCGcacUCGACUucaacuaccugGACCUcaGCGCa- -3'
miRNA:   3'- cGCUGCGGC---AGCUGA-----------CUGGG--UGCGcc -5'
1736 3' -58.5 NC_001347.2 + 137647 0.68 0.86702
Target:  5'- aUGGCGCuCGUUGACcagGAaagcugUCUACGCGGg -3'
miRNA:   3'- cGCUGCG-GCAGCUGa--CU------GGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 87744 0.68 0.86702
Target:  5'- aGCGGCcagaccucGCCGaaGGagccCUGGCCCAgGCGGu -3'
miRNA:   3'- -CGCUG--------CGGCagCU----GACUGGGUgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.