Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1736 | 3' | -58.5 | NC_001347.2 | + | 36437 | 0.68 | 0.86702 |
Target: 5'- gGCGGCGCggucCGUCGA--GACCggcggACGCGGa -3' miRNA: 3'- -CGCUGCG----GCAGCUgaCUGGg----UGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 200623 | 0.68 | 0.86702 |
Target: 5'- uGCG-CGCCGUCGA--GACCC-UGCa- -3' miRNA: 3'- -CGCuGCGGCAGCUgaCUGGGuGCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 39528 | 0.68 | 0.859953 |
Target: 5'- gGCGACauGCCGUUGcGCUGGgCCAUG-GGc -3' miRNA: 3'- -CGCUG--CGGCAGC-UGACUgGGUGCgCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 65228 | 0.68 | 0.852706 |
Target: 5'- aCGACcuguGCCG-CGGCUacGACCuCACGCGa -3' miRNA: 3'- cGCUG----CGGCaGCUGA--CUGG-GUGCGCc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 65855 | 0.68 | 0.852706 |
Target: 5'- gGCaGCGCCaG-CGGCUGGCCuucggcacgCugGCGGg -3' miRNA: 3'- -CGcUGCGG-CaGCUGACUGG---------GugCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 222443 | 0.68 | 0.845285 |
Target: 5'- uCGAgGCCGaUCGACUG-CCgCAUgagaGCGGg -3' miRNA: 3'- cGCUgCGGC-AGCUGACuGG-GUG----CGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 88076 | 0.68 | 0.845285 |
Target: 5'- aCGGCGCUGUC--CUGACuuuCCGCGCGc -3' miRNA: 3'- cGCUGCGGCAGcuGACUG---GGUGCGCc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 136477 | 0.68 | 0.837695 |
Target: 5'- gGCGACccucCCG-CGGgccCUGGCCCGCGCa- -3' miRNA: 3'- -CGCUGc---GGCaGCU---GACUGGGUGCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 228723 | 0.68 | 0.829941 |
Target: 5'- cGCcacCGCCG-CGGCgGAuuUCCGCGCGGg -3' miRNA: 3'- -CGcu-GCGGCaGCUGaCU--GGGUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 130231 | 0.68 | 0.829941 |
Target: 5'- uGCGGCGCUGUCucgGAcCUGAUCCuagGCGCc- -3' miRNA: 3'- -CGCUGCGGCAG---CU-GACUGGG---UGCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 159480 | 0.68 | 0.829941 |
Target: 5'- uCGGCGCgG-CGGCUGcugaACUCGCGCGa -3' miRNA: 3'- cGCUGCGgCaGCUGAC----UGGGUGCGCc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 177751 | 0.68 | 0.829941 |
Target: 5'- uCGACGCCGagGGCcucucagGACUUGCGCGa -3' miRNA: 3'- cGCUGCGGCagCUGa------CUGGGUGCGCc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 38319 | 0.69 | 0.821231 |
Target: 5'- gGCGGCGCCGUaCGGCUGcggaggcACaggUACaGCGGa -3' miRNA: 3'- -CGCUGCGGCA-GCUGAC-------UGg--GUG-CGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 2100 | 0.69 | 0.819628 |
Target: 5'- aCGGCGCCGcCGGCgggGGCgCgauuugcgugccuaACGCGGa -3' miRNA: 3'- cGCUGCGGCaGCUGa--CUGgG--------------UGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 184931 | 0.69 | 0.813969 |
Target: 5'- cGCGACacaGCCGUCugcaGCUcgucGGCCgGCGUGGg -3' miRNA: 3'- -CGCUG---CGGCAGc---UGA----CUGGgUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 100190 | 0.69 | 0.813969 |
Target: 5'- cGCGGCGCCG-CGGCcucGCCCAgGUa- -3' miRNA: 3'- -CGCUGCGGCaGCUGac-UGGGUgCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 74140 | 0.69 | 0.813969 |
Target: 5'- aGCGACGgCGUCG-CU--CCCACcCGGg -3' miRNA: 3'- -CGCUGCgGCAGCuGAcuGGGUGcGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 39341 | 0.69 | 0.813969 |
Target: 5'- aGgGGCGCC--CGGC-GGCCCGCGgGGu -3' miRNA: 3'- -CgCUGCGGcaGCUGaCUGGGUGCgCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 128782 | 0.69 | 0.797421 |
Target: 5'- aGCGACGgCGgccauggaGCUGcACUCACGCGGc -3' miRNA: 3'- -CGCUGCgGCagc-----UGAC-UGGGUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 189528 | 0.69 | 0.788948 |
Target: 5'- gGC-ACGCCGUCGACgGuACCCgccACGCu- -3' miRNA: 3'- -CGcUGCGGCAGCUGaC-UGGG---UGCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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