miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 1032 0.67 0.905985
Target:  5'- aCGACGCCGggccaCGGCguccaccggguagaACCC-CGCGGg -3'
miRNA:   3'- cGCUGCGGCa----GCUGac------------UGGGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 1341 0.66 0.916594
Target:  5'- gGCGugGgCG-CGACgGACCUGCGUc- -3'
miRNA:   3'- -CGCugCgGCaGCUGaCUGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 1566 0.66 0.916594
Target:  5'- cGCGACGCgGaCGAgUGguuucgGCaCgGCGCGGg -3'
miRNA:   3'- -CGCUGCGgCaGCUgAC------UG-GgUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 1762 0.67 0.895866
Target:  5'- uGCaGACGCCGggcaggCGACUGcaGCCgaugguacugcugggCGCGUGGc -3'
miRNA:   3'- -CG-CUGCGGCa-----GCUGAC--UGG---------------GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 1912 0.74 0.556089
Target:  5'- gGCuGGCGCUGggcgCGguGCUG-CCCGCGCGGu -3'
miRNA:   3'- -CG-CUGCGGCa---GC--UGACuGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 2100 0.69 0.819628
Target:  5'- aCGGCGCCGcCGGCgggGGCgCgauuugcgugccuaACGCGGa -3'
miRNA:   3'- cGCUGCGGCaGCUGa--CUGgG--------------UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 2224 0.74 0.528196
Target:  5'- gGCGGCGUCGggGACcGugCCGCGCGc -3'
miRNA:   3'- -CGCUGCGGCagCUGaCugGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 2326 0.66 0.931816
Target:  5'- gGCGGCggaGCUGUCGcACUuuCUgCGCGCGGg -3'
miRNA:   3'- -CGCUG---CGGCAGC-UGAcuGG-GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 12727 0.66 0.921877
Target:  5'- cGCGAgaucugGCgGUUGGCUGACa-GCGUGGa -3'
miRNA:   3'- -CGCUg-----CGgCAGCUGACUGggUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 17126 0.67 0.880596
Target:  5'- uCGucCGCCGUCGGCcGccGCCCAUGCc- -3'
miRNA:   3'- cGCu-GCGGCAGCUGaC--UGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 25322 0.67 0.871858
Target:  5'- gGCGAC-CCGcagucuggcuugggUCGACUGuugCCGCGUGGc -3'
miRNA:   3'- -CGCUGcGGC--------------AGCUGACug-GGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 29141 0.7 0.726593
Target:  5'- cCGAUcggGCgGUCGACUggaggcucugugGACCCuGCGCGGg -3'
miRNA:   3'- cGCUG---CGgCAGCUGA------------CUGGG-UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 31665 0.68 0.86702
Target:  5'- -aGugGCUcggGUCGGCUGgucggGCCguCGCGGa -3'
miRNA:   3'- cgCugCGG---CAGCUGAC-----UGGguGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 36437 0.68 0.86702
Target:  5'- gGCGGCGCggucCGUCGA--GACCggcggACGCGGa -3'
miRNA:   3'- -CGCUGCG----GCAGCUgaCUGGg----UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 37589 0.66 0.926951
Target:  5'- uUGugGUCGUCaACUGugCUGaGCGGg -3'
miRNA:   3'- cGCugCGGCAGcUGACugGGUgCGCC- -5'
1736 3' -58.5 NC_001347.2 + 38319 0.69 0.821231
Target:  5'- gGCGGCGCCGUaCGGCUGcggaggcACaggUACaGCGGa -3'
miRNA:   3'- -CGCUGCGGCA-GCUGAC-------UGg--GUG-CGCC- -5'
1736 3' -58.5 NC_001347.2 + 38566 0.68 0.86702
Target:  5'- aGCGACGCgGggugCGGC--GCCgACGCGa -3'
miRNA:   3'- -CGCUGCGgCa---GCUGacUGGgUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 39077 0.7 0.735775
Target:  5'- cGCGcccACGCCGUucaucUGGCUGcgcggcgucACCCGCGCGu -3'
miRNA:   3'- -CGC---UGCGGCA-----GCUGAC---------UGGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 39341 0.69 0.813969
Target:  5'- aGgGGCGCC--CGGC-GGCCCGCGgGGu -3'
miRNA:   3'- -CgCUGCGGcaGCUGaCUGGGUGCgCC- -5'
1736 3' -58.5 NC_001347.2 + 39528 0.68 0.859953
Target:  5'- gGCGACauGCCGUUGcGCUGGgCCAUG-GGc -3'
miRNA:   3'- -CGCUG--CGGCAGC-UGACUgGGUGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.