miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 58871 0.66 0.916594
Target:  5'- aGCGgcACGCCGgagUGACcucuCCCACGCa- -3'
miRNA:   3'- -CGC--UGCGGCa--GCUGacu-GGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 63225 0.67 0.905406
Target:  5'- cGCuGACGCUGUUuACgccGGCCUcCGCGGc -3'
miRNA:   3'- -CG-CUGCGGCAGcUGa--CUGGGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 65228 0.68 0.852706
Target:  5'- aCGACcuguGCCG-CGGCUacGACCuCACGCGa -3'
miRNA:   3'- cGCUG----CGGCaGCUGA--CUGG-GUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 65855 0.68 0.852706
Target:  5'- gGCaGCGCCaG-CGGCUGGCCuucggcacgCugGCGGg -3'
miRNA:   3'- -CGcUGCGG-CaGCUGACUGG---------GugCGCC- -5'
1736 3' -58.5 NC_001347.2 + 73978 1.11 0.00266
Target:  5'- aGCGACGCCGUCGACUGACCCACGCGGc -3'
miRNA:   3'- -CGCUGCGGCAGCUGACUGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 74140 0.69 0.813969
Target:  5'- aGCGACGgCGUCG-CU--CCCACcCGGg -3'
miRNA:   3'- -CGCUGCgGCAGCuGAcuGGGUGcGCC- -5'
1736 3' -58.5 NC_001347.2 + 77518 0.7 0.735775
Target:  5'- cGCGugGCCGagGAgUGGaaguUgCACGCGGc -3'
miRNA:   3'- -CGCugCGGCagCUgACU----GgGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 78343 0.66 0.911103
Target:  5'- cGCGugGuCCG--GGCgGACCCgGCGUGGu -3'
miRNA:   3'- -CGCugC-GGCagCUGaCUGGG-UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 78378 0.74 0.519012
Target:  5'- gGCGGCGCCGUgGugggagGACCCGCG-GGc -3'
miRNA:   3'- -CGCUGCGGCAgCuga---CUGGGUGCgCC- -5'
1736 3' -58.5 NC_001347.2 + 78695 0.67 0.895866
Target:  5'- cGCGGCGCCcuuccGUCcGCUGGCgguggaagacaaccgCCugGUGGc -3'
miRNA:   3'- -CGCUGCGG-----CAGcUGACUG---------------GGugCGCC- -5'
1736 3' -58.5 NC_001347.2 + 82216 0.67 0.893401
Target:  5'- cGCGuucCGCgGUauGCgUGACCaCACGCGGc -3'
miRNA:   3'- -CGCu--GCGgCAgcUG-ACUGG-GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 87744 0.68 0.86702
Target:  5'- aGCGGCcagaccucGCCGaaGGagccCUGGCCCAgGCGGu -3'
miRNA:   3'- -CGCUG--------CGGCagCU----GACUGGGUgCGCC- -5'
1736 3' -58.5 NC_001347.2 + 88076 0.68 0.845285
Target:  5'- aCGGCGCUGUC--CUGACuuuCCGCGCGc -3'
miRNA:   3'- cGCUGCGGCAGcuGACUG---GGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 88603 0.69 0.780351
Target:  5'- gGCGAC-CUGagCGGCggcGGCCUGCGCGGc -3'
miRNA:   3'- -CGCUGcGGCa-GCUGa--CUGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 90375 0.66 0.911103
Target:  5'- cCGGCaCC-UCGGCcGAUUCGCGCGGa -3'
miRNA:   3'- cGCUGcGGcAGCUGaCUGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 99144 0.74 0.53744
Target:  5'- cGCGGCGCgCGUaCGcCgaGACCCgACGCGGc -3'
miRNA:   3'- -CGCUGCG-GCA-GCuGa-CUGGG-UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 99532 0.66 0.921877
Target:  5'- cGCGAUcugcgGCCGggucgcgCGGCagugacagcuugUGACCCGCGCu- -3'
miRNA:   3'- -CGCUG-----CGGCa------GCUG------------ACUGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 100190 0.69 0.813969
Target:  5'- cGCGGCGCCG-CGGCcucGCCCAgGUa- -3'
miRNA:   3'- -CGCUGCGGCaGCUGac-UGGGUgCGcc -5'
1736 3' -58.5 NC_001347.2 + 105956 0.73 0.573029
Target:  5'- cGCGAgCGCagCGUCGGCgagccgcgcacGCCCGCGCGGc -3'
miRNA:   3'- -CGCU-GCG--GCAGCUGac---------UGGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 107026 0.67 0.905406
Target:  5'- cGCGGCuuCCGUCG-CUGAUaC-CGCGGa -3'
miRNA:   3'- -CGCUGc-GGCAGCuGACUGgGuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.