miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 3' -58.5 NC_001347.2 + 228723 0.68 0.829941
Target:  5'- cGCcacCGCCG-CGGCgGAuuUCCGCGCGGg -3'
miRNA:   3'- -CGcu-GCGGCaGCUGaCU--GGGUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 222443 0.68 0.845285
Target:  5'- uCGAgGCCGaUCGACUG-CCgCAUgagaGCGGg -3'
miRNA:   3'- cGCUgCGGC-AGCUGACuGG-GUG----CGCC- -5'
1736 3' -58.5 NC_001347.2 + 209860 0.69 0.780351
Target:  5'- cGCGugGCCGUCuGGCUcacGAcguugcuuuccuCCCA-GCGGg -3'
miRNA:   3'- -CGCugCGGCAG-CUGA---CU------------GGGUgCGCC- -5'
1736 3' -58.5 NC_001347.2 + 200762 0.66 0.916594
Target:  5'- --cAUGCCGUUGACguACCCGC-CGGg -3'
miRNA:   3'- cgcUGCGGCAGCUGacUGGGUGcGCC- -5'
1736 3' -58.5 NC_001347.2 + 200623 0.68 0.86702
Target:  5'- uGCG-CGCCGUCGA--GACCC-UGCa- -3'
miRNA:   3'- -CGCuGCGGCAGCUgaCUGGGuGCGcc -5'
1736 3' -58.5 NC_001347.2 + 197736 0.67 0.880596
Target:  5'- cGCGACGCCGaCGGCcagGucAUCCGCGaguCGGc -3'
miRNA:   3'- -CGCUGCGGCaGCUGa--C--UGGGUGC---GCC- -5'
1736 3' -58.5 NC_001347.2 + 196520 0.66 0.926951
Target:  5'- cGCaGACGCUGaUCGAC-GAcuacuuucugcuCCC-CGCGGg -3'
miRNA:   3'- -CG-CUGCGGC-AGCUGaCU------------GGGuGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 196440 0.7 0.761929
Target:  5'- gGCGAUccgccaccucacgGCCGgCGACgUGGCCCGCGUccaGGa -3'
miRNA:   3'- -CGCUG-------------CGGCaGCUG-ACUGGGUGCG---CC- -5'
1736 3' -58.5 NC_001347.2 + 196232 0.67 0.893401
Target:  5'- cGCGA-GCCGaagCGGCauugaagGACCUcuACGCGGc -3'
miRNA:   3'- -CGCUgCGGCa--GCUGa------CUGGG--UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 189528 0.69 0.788948
Target:  5'- gGC-ACGCCGUCGACgGuACCCgccACGCu- -3'
miRNA:   3'- -CGcUGCGGCAGCUGaC-UGGG---UGCGcc -5'
1736 3' -58.5 NC_001347.2 + 189133 0.7 0.753894
Target:  5'- -gGAgGCCGUCGACU---CCACGCGc -3'
miRNA:   3'- cgCUgCGGCAGCUGAcugGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 185546 0.67 0.905406
Target:  5'- cGCGAUugGCCGUCGGCg--UCCGCaGuCGGg -3'
miRNA:   3'- -CGCUG--CGGCAGCUGacuGGGUG-C-GCC- -5'
1736 3' -58.5 NC_001347.2 + 184931 0.69 0.813969
Target:  5'- cGCGACacaGCCGUCugcaGCUcgucGGCCgGCGUGGg -3'
miRNA:   3'- -CGCUG---CGGCAGc---UGA----CUGGgUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 182858 0.7 0.733028
Target:  5'- cGCG-CGCCGugggaUCGGCUucgagaucgagcugGGCCuCGCGCGGc -3'
miRNA:   3'- -CGCuGCGGC-----AGCUGA--------------CUGG-GUGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 182292 0.7 0.726593
Target:  5'- uGCGGCGUCGUugccggggCGGCUGcUCCAggucCGCGGa -3'
miRNA:   3'- -CGCUGCGGCA--------GCUGACuGGGU----GCGCC- -5'
1736 3' -58.5 NC_001347.2 + 177751 0.68 0.829941
Target:  5'- uCGACGCCGagGGCcucucagGACUUGCGCGa -3'
miRNA:   3'- cGCUGCGGCagCUGa------CUGGGUGCGCc -5'
1736 3' -58.5 NC_001347.2 + 176423 0.66 0.931816
Target:  5'- gGCGuACGCCGUguaccaccaaggCGACaUGGCCCucaugACGCu- -3'
miRNA:   3'- -CGC-UGCGGCA------------GCUG-ACUGGG-----UGCGcc -5'
1736 3' -58.5 NC_001347.2 + 175330 0.67 0.898903
Target:  5'- cCGuCGCCGUC-ACUGccaccgacauggaGCCCACGCc- -3'
miRNA:   3'- cGCuGCGGCAGcUGAC-------------UGGGUGCGcc -5'
1736 3' -58.5 NC_001347.2 + 175056 0.74 0.546739
Target:  5'- aGCGGCGCCGucuUCGGCgUGcauCCCgagACGCGGc -3'
miRNA:   3'- -CGCUGCGGC---AGCUG-ACu--GGG---UGCGCC- -5'
1736 3' -58.5 NC_001347.2 + 172157 0.78 0.331348
Target:  5'- cGUGACGCCGUCaGugUGGgcUUCGCGCGGc -3'
miRNA:   3'- -CGCUGCGGCAG-CugACU--GGGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.