Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1736 | 3' | -58.5 | NC_001347.2 | + | 2224 | 0.74 | 0.528196 |
Target: 5'- gGCGGCGUCGggGACcGugCCGCGCGc -3' miRNA: 3'- -CGCUGCGGCagCUGaCugGGUGCGCc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 1566 | 0.66 | 0.916594 |
Target: 5'- cGCGACGCgGaCGAgUGguuucgGCaCgGCGCGGg -3' miRNA: 3'- -CGCUGCGgCaGCUgAC------UG-GgUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 1341 | 0.66 | 0.916594 |
Target: 5'- gGCGugGgCG-CGACgGACCUGCGUc- -3' miRNA: 3'- -CGCugCgGCaGCUGaCUGGGUGCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 157590 | 0.66 | 0.916594 |
Target: 5'- uGCuGCGCCGUcugCGGCUcuACCCGCccgaGCGGc -3' miRNA: 3'- -CGcUGCGGCA---GCUGAc-UGGGUG----CGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 126896 | 0.66 | 0.916594 |
Target: 5'- aCGGCgGCCGcaUCGACggcacGCaCCugGCGGg -3' miRNA: 3'- cGCUG-CGGC--AGCUGac---UG-GGugCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 90375 | 0.66 | 0.911103 |
Target: 5'- cCGGCaCC-UCGGCcGAUUCGCGCGGa -3' miRNA: 3'- cGCUGcGGcAGCUGaCUGGGUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 58871 | 0.66 | 0.916594 |
Target: 5'- aGCGgcACGCCGgagUGACcucuCCCACGCa- -3' miRNA: 3'- -CGC--UGCGGCa--GCUGacu-GGGUGCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 113878 | 0.66 | 0.916594 |
Target: 5'- cGCGACcgacaacgaagGCUGUCc-CUGGCCCuGCGCGu -3' miRNA: 3'- -CGCUG-----------CGGCAGcuGACUGGG-UGCGCc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 78343 | 0.66 | 0.911103 |
Target: 5'- cGCGugGuCCG--GGCgGACCCgGCGUGGu -3' miRNA: 3'- -CGCugC-GGCagCUGaCUGGG-UGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 200762 | 0.66 | 0.916594 |
Target: 5'- --cAUGCCGUUGACguACCCGC-CGGg -3' miRNA: 3'- cgcUGCGGCAGCUGacUGGGUGcGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 99532 | 0.66 | 0.921877 |
Target: 5'- cGCGAUcugcgGCCGggucgcgCGGCagugacagcuugUGACCCGCGCu- -3' miRNA: 3'- -CGCUG-----CGGCa------GCUG------------ACUGGGUGCGcc -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 12727 | 0.66 | 0.921877 |
Target: 5'- cGCGAgaucugGCgGUUGGCUGACa-GCGUGGa -3' miRNA: 3'- -CGCUg-----CGgCAGCUGACUGggUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 2326 | 0.66 | 0.931816 |
Target: 5'- gGCGGCggaGCUGUCGcACUuuCUgCGCGCGGg -3' miRNA: 3'- -CGCUG---CGGCAGC-UGAcuGG-GUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 142429 | 0.66 | 0.931816 |
Target: 5'- aGUGGCGUCGgcgCGGCgu-CCgGCGuCGGg -3' miRNA: 3'- -CGCUGCGGCa--GCUGacuGGgUGC-GCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 196520 | 0.66 | 0.926951 |
Target: 5'- cGCaGACGCUGaUCGAC-GAcuacuuucugcuCCC-CGCGGg -3' miRNA: 3'- -CG-CUGCGGC-AGCUGaCU------------GGGuGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 161581 | 0.66 | 0.926951 |
Target: 5'- cGCGGCGCCGcCGGCUa---CGCGUccGGg -3' miRNA: 3'- -CGCUGCGGCaGCUGAcuggGUGCG--CC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 112751 | 0.66 | 0.926951 |
Target: 5'- aGUGACguGCCGcCaACUGgucguACCCACGaCGGg -3' miRNA: 3'- -CGCUG--CGGCaGcUGAC-----UGGGUGC-GCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 148599 | 0.66 | 0.921877 |
Target: 5'- aGCGGCGgCGUgacCGGCgGugCgGuCGCGGg -3' miRNA: 3'- -CGCUGCgGCA---GCUGaCugGgU-GCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 155412 | 0.66 | 0.921877 |
Target: 5'- uCGGCGCCGcUGAUUGAgg-ACGCGGa -3' miRNA: 3'- cGCUGCGGCaGCUGACUgggUGCGCC- -5' |
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1736 | 3' | -58.5 | NC_001347.2 | + | 37589 | 0.66 | 0.926951 |
Target: 5'- uUGugGUCGUCaACUGugCUGaGCGGg -3' miRNA: 3'- cGCugCGGCAGcUGACugGGUgCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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