miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1736 5' -52.3 NC_001347.2 + 155527 0.66 0.996711
Target:  5'- cUCCGgugcCGAcGCGACCGcuggugaucgacGAGGACGcggaGCCCg -3'
miRNA:   3'- cAGGC----GCU-UGUUGGU------------UUCCUGC----UGGG- -5'
1736 5' -52.3 NC_001347.2 + 104256 0.66 0.996711
Target:  5'- -aCCGCGuGCgAACCGAcauGGGCGuCCg -3'
miRNA:   3'- caGGCGCuUG-UUGGUUu--CCUGCuGGg -5'
1736 5' -52.3 NC_001347.2 + 188067 0.66 0.996711
Target:  5'- uGUCCcCacGCAGCCGcuGGACGGCUg -3'
miRNA:   3'- -CAGGcGcuUGUUGGUuuCCUGCUGGg -5'
1736 5' -52.3 NC_001347.2 + 191159 0.66 0.996159
Target:  5'- -gCCGCGuGACGcugacccguCCAAAGGGCGccGCCUc -3'
miRNA:   3'- caGGCGC-UUGUu--------GGUUUCCUGC--UGGG- -5'
1736 5' -52.3 NC_001347.2 + 193714 0.66 0.996159
Target:  5'- uUCCGCGAguuGCuGGCCugcGAGGAC-ACCg -3'
miRNA:   3'- cAGGCGCU---UG-UUGGu--UUCCUGcUGGg -5'
1736 5' -52.3 NC_001347.2 + 165298 0.66 0.996159
Target:  5'- -cCCGUGAGCAccaucagcACCugauGGA-GACCCu -3'
miRNA:   3'- caGGCGCUUGU--------UGGuuu-CCUgCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 164656 0.66 0.996159
Target:  5'- aUCgGUGAGgAAagcucgUCGAAGGACGGCgCCg -3'
miRNA:   3'- cAGgCGCUUgUU------GGUUUCCUGCUG-GG- -5'
1736 5' -52.3 NC_001347.2 + 38120 0.66 0.995534
Target:  5'- cGUCCaGCGGGCAGuacCCGAAcacGGCG-CCCa -3'
miRNA:   3'- -CAGG-CGCUUGUU---GGUUUc--CUGCuGGG- -5'
1736 5' -52.3 NC_001347.2 + 117468 0.66 0.995534
Target:  5'- uGUCCGUaGGCGGCCAgcagacAGGcGGCGGCUUc -3'
miRNA:   3'- -CAGGCGcUUGUUGGU------UUC-CUGCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 107353 0.66 0.995534
Target:  5'- -cCUGCGGcuGCGACgCGAAacgguGcGACGACCCu -3'
miRNA:   3'- caGGCGCU--UGUUG-GUUU-----C-CUGCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 170992 0.66 0.995534
Target:  5'- uUCuCGCGuGAC-GCCAGuuGGGCGGCCa -3'
miRNA:   3'- cAG-GCGC-UUGuUGGUUu-CCUGCUGGg -5'
1736 5' -52.3 NC_001347.2 + 18353 0.66 0.994827
Target:  5'- -gCUGCGGcCGugGCCAA--GACGGCCCg -3'
miRNA:   3'- caGGCGCUuGU--UGGUUucCUGCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 94115 0.66 0.994827
Target:  5'- cGUCUGCGcgccuGAgAGCCGAuuaucGGGGCagcgcaGACCCa -3'
miRNA:   3'- -CAGGCGC-----UUgUUGGUU-----UCCUG------CUGGG- -5'
1736 5' -52.3 NC_001347.2 + 96367 0.66 0.994827
Target:  5'- -gCCGUGGAgggcaacacCAACCAGGcGGCGGCCg -3'
miRNA:   3'- caGGCGCUU---------GUUGGUUUcCUGCUGGg -5'
1736 5' -52.3 NC_001347.2 + 13318 0.66 0.994827
Target:  5'- cGUCCGaCGAugACGACCAagaaAAGGAa-ACCg -3'
miRNA:   3'- -CAGGC-GCU--UGUUGGU----UUCCUgcUGGg -5'
1736 5' -52.3 NC_001347.2 + 193545 0.66 0.994827
Target:  5'- aUCUGgcCGGAUuuuuuGCCAAGGGcaugauccgcuGCGACCCg -3'
miRNA:   3'- cAGGC--GCUUGu----UGGUUUCC-----------UGCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 168810 0.66 0.994033
Target:  5'- --gCGCGGugG-CCAAAcGGccgcGCGACCCg -3'
miRNA:   3'- cagGCGCUugUuGGUUU-CC----UGCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 19417 0.66 0.994033
Target:  5'- aUCCcCGAACccGACCAGAugggagacgacGGACcaGACCCg -3'
miRNA:   3'- cAGGcGCUUG--UUGGUUU-----------CCUG--CUGGG- -5'
1736 5' -52.3 NC_001347.2 + 110235 0.66 0.994033
Target:  5'- cGUCUGCGAcuccuggaccuGCGuACCAacauaGAGGugagcCGGCCCu -3'
miRNA:   3'- -CAGGCGCU-----------UGU-UGGU-----UUCCu----GCUGGG- -5'
1736 5' -52.3 NC_001347.2 + 129158 0.66 0.994033
Target:  5'- -aCCGCGGGCuuCCGuggcggacauAGGGCGuCCUc -3'
miRNA:   3'- caGGCGCUUGuuGGUu---------UCCUGCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.