miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17360 5' -53.5 NC_004367.1 + 11395 0.66 0.956502
Target:  5'- -uGAGuGGugGAGCuUGGGggGuGGGGGa -3'
miRNA:   3'- gcCUC-CCuuUUUGuACCCuuC-CCCCU- -5'
17360 5' -53.5 NC_004367.1 + 22194 0.67 0.943421
Target:  5'- cCGGAcaguuuuGGGAAGggUGUGGc--GGGGGAc -3'
miRNA:   3'- -GCCU-------CCCUUUuuGUACCcuuCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 22426 0.68 0.923649
Target:  5'- gGGAuGGGgcGAccuACAuuUGGGAAGGGGc- -3'
miRNA:   3'- gCCU-CCCuuUU---UGU--ACCCUUCCCCcu -5'
17360 5' -53.5 NC_004367.1 + 22635 0.77 0.455994
Target:  5'- gGGAuGGGGugaccuACAuuUGGGAAGGGGGGg -3'
miRNA:   3'- gCCU-CCCUuuu---UGU--ACCCUUCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 23922 0.66 0.956502
Target:  5'- --cAGGGuauauAGACAUGGGAcuucacgguauGGGGGAa -3'
miRNA:   3'- gccUCCCuu---UUUGUACCCUu----------CCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 55787 0.67 0.943421
Target:  5'- cCGGAcaguuuuGGGAAGggUGUGGc--GGGGGAc -3'
miRNA:   3'- -GCCU-------CCCUUUuuGUACCcuuCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 55997 0.68 0.923649
Target:  5'- gGGAuGGGgcGAccuACAuuUGGGAAGGGGc- -3'
miRNA:   3'- gCCU-CCCuuUU---UGU--ACCCUUCCCCcu -5'
17360 5' -53.5 NC_004367.1 + 56205 0.77 0.455994
Target:  5'- gGGAuGGGGugaccuACAuuUGGGAAGGGGGGg -3'
miRNA:   3'- gCCU-CCCUuuu---UGU--ACCCUUCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 66257 0.67 0.934255
Target:  5'- uGGAuucgcaGGAAcuuguGGCAUGGGAcgacgccugguGGGGGGAu -3'
miRNA:   3'- gCCUc-----CCUUu----UUGUACCCU-----------UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 69143 1.09 0.004841
Target:  5'- cCGGAGGGAAAAACAUGGGAAGGGGGAc -3'
miRNA:   3'- -GCCUCCCUUUUUGUACCCUUCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 76844 0.67 0.948325
Target:  5'- uGGcuGGGAAGAUAUGGGuuuGGGGu- -3'
miRNA:   3'- gCCucCCUUUUUGUACCCuu-CCCCcu -5'
17360 5' -53.5 NC_004367.1 + 100023 0.72 0.748803
Target:  5'- aGGAGGGguGGGC-UGGGGAGGaguaGGAg -3'
miRNA:   3'- gCCUCCCuuUUUGuACCCUUCCc---CCU- -5'
17360 5' -53.5 NC_004367.1 + 100059 0.8 0.328651
Target:  5'- aGGAGGGguGGGC-UGGGGAGGaGGGGu -3'
miRNA:   3'- gCCUCCCuuUUUGuACCCUUCC-CCCU- -5'
17360 5' -53.5 NC_004367.1 + 100095 0.8 0.328651
Target:  5'- aGGAGGGguGGGC-UGGGGAGGaGGGGu -3'
miRNA:   3'- gCCUCCCuuUUUGuACCCUUCC-CCCU- -5'
17360 5' -53.5 NC_004367.1 + 106611 0.68 0.917395
Target:  5'- uGGAGGuGGuugugguAGAACggGGGAAaauguaaucGGGGGAg -3'
miRNA:   3'- gCCUCC-CU-------UUUUGuaCCCUU---------CCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 115692 0.77 0.455994
Target:  5'- gGGAuGGGGugaccuACAuuUGGGAAGGGGGGg -3'
miRNA:   3'- gCCU-CCCUuuu---UGU--ACCCUUCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 117669 0.75 0.554068
Target:  5'- ---uGGGuaugauGACAUGGGggGGGGGGg -3'
miRNA:   3'- gccuCCCuuu---UUGUACCCuuCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 140582 0.75 0.581724
Target:  5'- cCGGGGGGGcuugggguagguuuuGGgGUGGGggGGGGGu -3'
miRNA:   3'- -GCCUCCCUuu-------------UUgUACCCuuCCCCCu -5'
17360 5' -53.5 NC_004367.1 + 140909 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5'
17360 5' -53.5 NC_004367.1 + 141237 0.71 0.768192
Target:  5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3'
miRNA:   3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.