Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17360 | 5' | -53.5 | NC_004367.1 | + | 149101 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 146807 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 146480 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 146152 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 106611 | 0.68 | 0.917395 |
Target: 5'- uGGAGGuGGuugugguAGAACggGGGAAaauguaaucGGGGGAg -3' miRNA: 3'- gCCUCC-CU-------UUUUGuaCCCUU---------CCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 140909 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 141237 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 141892 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 142220 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 142548 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 142875 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 143203 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 143531 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 143858 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 144186 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 144514 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 144841 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 145169 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 145497 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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17360 | 5' | -53.5 | NC_004367.1 | + | 145824 | 0.71 | 0.768192 |
Target: 5'- cCGGGGGGGcuuGGggUAgguuuUGGGGugGGGGGGGg -3' miRNA: 3'- -GCCUCCCU---UUuuGU-----ACCCU--UCCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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