miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17362 3' -54.5 NC_004367.1 + 65019 0.73 0.643261
Target:  5'- gGCCGUUgCCCCUGuaaccagacaguccAAAGCGUGGuaaaGAc -3'
miRNA:   3'- -UGGCAAgGGGGAC--------------UUUCGCACCua--CU- -5'
17362 3' -54.5 NC_004367.1 + 74136 1.09 0.004046
Target:  5'- uACCGUUCCCCCUGAAAGCGUGGAUGAa -3'
miRNA:   3'- -UGGCAAGGGGGACUUUCGCACCUACU- -5'
17362 3' -54.5 NC_004367.1 + 120904 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 121257 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 123813 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 124166 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 127075 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 129632 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 129984 0.66 0.928091
Target:  5'- gGCUGgaCCCCCUGAccgggAGGCGagaGGAUa- -3'
miRNA:   3'- -UGGCaaGGGGGACU-----UUCGCa--CCUAcu -5'
17362 3' -54.5 NC_004367.1 + 140770 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 141098 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 141426 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 141753 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 142081 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 142409 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 143064 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 143392 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 144047 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 144375 0.66 0.942981
Target:  5'- gGCgCGggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UG-GCaagGGGGACuUUCGCaCCUACU- -5'
17362 3' -54.5 NC_004367.1 + 144710 0.69 0.821923
Target:  5'- aACCGUgggcgcgggaCCCCUG-GAGCGgGGGUGGg -3'
miRNA:   3'- -UGGCAag--------GGGGACuUUCGCaCCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.