miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17364 3' -48.5 NC_004367.1 + 82460 1.09 0.015932
Target:  5'- gCCUCCGGAAAACCACGGGUUAGUUUUg -3'
miRNA:   3'- -GGAGGCCUUUUGGUGCCCAAUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 142224 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 145173 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 145501 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 144845 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 144518 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 144190 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 143862 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 143535 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 143207 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 142879 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 142552 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 146484 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 141896 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 141569 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 141241 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 140913 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 140586 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 145828 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5'
17364 3' -48.5 NC_004367.1 + 146156 0.73 0.933677
Target:  5'- aCCcCCgGGggGGCUugGGGUaGGUUUUg -3'
miRNA:   3'- -GGaGG-CCuuUUGGugCCCAaUCAAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.