miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17365 5' -47.9 NC_004367.1 + 92023 0.66 0.999585
Target:  5'- cCGAGgaa-ACACACCGgaACAGAUGg- -3'
miRNA:   3'- aGUUCauggUGUGUGGU--UGUCUACac -5'
17365 5' -47.9 NC_004367.1 + 37958 0.66 0.999585
Target:  5'- cCAAGUaauaACCGCcuuaACGCaCGGCAGGUGa- -3'
miRNA:   3'- aGUUCA----UGGUG----UGUG-GUUGUCUACac -5'
17365 5' -47.9 NC_004367.1 + 7244 0.67 0.999008
Target:  5'- aUUGAGUuuguCCACACGCCuuuaGGAUGg- -3'
miRNA:   3'- -AGUUCAu---GGUGUGUGGuug-UCUACac -5'
17365 5' -47.9 NC_004367.1 + 74826 0.67 0.998523
Target:  5'- cUCAGccGUGCCACA-GCCGACGGAa--- -3'
miRNA:   3'- -AGUU--CAUGGUGUgUGGUUGUCUacac -5'
17365 5' -47.9 NC_004367.1 + 94147 0.67 0.998214
Target:  5'- -aGAGUauACCACACGCCuacAugAGA-GUGg -3'
miRNA:   3'- agUUCA--UGGUGUGUGG---UugUCUaCAC- -5'
17365 5' -47.9 NC_004367.1 + 104711 0.67 0.997851
Target:  5'- cUCAAaaACCACugACCGGCAccGAUgGUGg -3'
miRNA:   3'- -AGUUcaUGGUGugUGGUUGU--CUA-CAC- -5'
17365 5' -47.9 NC_004367.1 + 96376 0.69 0.993206
Target:  5'- aUCGGGUGgaaCAC-CACCAaguGCAGAUGUu -3'
miRNA:   3'- -AGUUCAUg--GUGuGUGGU---UGUCUACAc -5'
17365 5' -47.9 NC_004367.1 + 79007 0.7 0.988128
Target:  5'- -gAAGUGuaaauuaUACACACCuGACAGAUGUGc -3'
miRNA:   3'- agUUCAUg------GUGUGUGG-UUGUCUACAC- -5'
17365 5' -47.9 NC_004367.1 + 18046 0.7 0.986486
Target:  5'- -gGGGUGCgGCAaguaacaGCCAACAGGUGg- -3'
miRNA:   3'- agUUCAUGgUGUg------UGGUUGUCUACac -5'
17365 5' -47.9 NC_004367.1 + 132437 0.82 0.548164
Target:  5'- cCAAGUuuaacgGCCACACAgCAACAGAUGUu -3'
miRNA:   3'- aGUUCA------UGGUGUGUgGUUGUCUACAc -5'
17365 5' -47.9 NC_004367.1 + 82632 1.09 0.015749
Target:  5'- uUCAAGUACCACACACCAACAGAUGUGc -3'
miRNA:   3'- -AGUUCAUGGUGUGUGGUUGUCUACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.