miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17366 5' -56.5 NC_004367.1 + 102752 0.7 0.68594
Target:  5'- uGCCUUCCAGAuccgccacccauGGA--GGCUCCGGAGc -3'
miRNA:   3'- uCGGAGGGUCU------------UUUgaUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 121127 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 124036 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 129854 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 126945 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 121034 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 123943 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 126852 0.71 0.624435
Target:  5'- cGCCggCCUAGucc-CUAGCCUCGGGGu -3'
miRNA:   3'- uCGGa-GGGUCuuuuGAUCGGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 129811 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 126902 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 123993 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 121084 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 121077 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 123986 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 126895 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 129804 0.71 0.603893
Target:  5'- cGCCUCCCGGucAGgggguccagcccCUGG-CCCGGAGg -3'
miRNA:   3'- uCGGAGGGUCuuUU------------GAUCgGGGCCUC- -5'
17366 5' -56.5 NC_004367.1 + 117076 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116816 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116713 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5'
17366 5' -56.5 NC_004367.1 + 116585 0.72 0.530046
Target:  5'- aGGCCUgggcacccggaaaaCCCGGGAGGCcugGGCaCCCGGAa -3'
miRNA:   3'- -UCGGA--------------GGGUCUUUUGa--UCG-GGGCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.