miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17367 5' -49.6 NC_004367.1 + 5721 0.7 0.958224
Target:  5'- ----gGGCgGGcCCGGAUGugACAGGa -3'
miRNA:   3'- caaaaCUGgUC-GGCUUACugUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 20564 0.71 0.940581
Target:  5'- ----cGGCCAGCCGuua-GCACAGGc -3'
miRNA:   3'- caaaaCUGGUCGGCuuacUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 35164 0.67 0.990209
Target:  5'- ---aUGGCCGGCCcguccgucauUGAUGCGGGUg -3'
miRNA:   3'- caaaACUGGUCGGcuu-------ACUGUGUCCA- -5'
17367 5' -49.6 NC_004367.1 + 64106 0.69 0.977359
Target:  5'- ---aUGACCuGCCGcAUGACACAu-- -3'
miRNA:   3'- caaaACUGGuCGGCuUACUGUGUcca -5'
17367 5' -49.6 NC_004367.1 + 81652 0.67 0.992813
Target:  5'- uUUUUGGCgGGCCGuuagGACuucuCGGGUu -3'
miRNA:   3'- cAAAACUGgUCGGCuua-CUGu---GUCCA- -5'
17367 5' -49.6 NC_004367.1 + 87629 0.66 0.996118
Target:  5'- ----cGcACCAGCCGAGgacauuauauUGGCACcGGUu -3'
miRNA:   3'- caaaaC-UGGUCGGCUU----------ACUGUGuCCA- -5'
17367 5' -49.6 NC_004367.1 + 88250 0.71 0.940581
Target:  5'- uGUUUUcACac-CCGAAUGACACAGGUc -3'
miRNA:   3'- -CAAAAcUGgucGGCUUACUGUGUCCA- -5'
17367 5' -49.6 NC_004367.1 + 88386 1.07 0.0137
Target:  5'- uGUUUUGACCAGCCGAAUGACACAGGUc -3'
miRNA:   3'- -CAAAACUGGUCGGCUUACUGUGUCCA- -5'
17367 5' -49.6 NC_004367.1 + 88391 0.66 0.994911
Target:  5'- uGUUUUGACCAGCCGuauucaugcaucuuGUGuACAuuaguuuCAGGc -3'
miRNA:   3'- -CAAAACUGGUCGGCu-------------UAC-UGU-------GUCCa -5'
17367 5' -49.6 NC_004367.1 + 88529 0.66 0.994911
Target:  5'- uGUUUUGACCAGCCGuauucaugcaucuuGUGuACAuuaguuuCAGGc -3'
miRNA:   3'- -CAAAACUGGUCGGCu-------------UAC-UGU-------GUCCa -5'
17367 5' -49.6 NC_004367.1 + 121376 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 121476 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 121576 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 121676 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 121975 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGcuuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 124285 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 124385 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 124485 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 124585 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5'
17367 5' -49.6 NC_004367.1 + 124884 0.68 0.984034
Target:  5'- ----aGGCCugaAGCCGGcuuAUGAUGCAGGg -3'
miRNA:   3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.