Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 121676 | 0.68 | 0.984034 |
|
Target: 5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3' miRNA: 3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 121576 | 0.68 | 0.984034 |
|
Target: 5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3' miRNA: 3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 121476 | 0.68 | 0.984034 |
|
Target: 5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3' miRNA: 3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 121376 | 0.68 | 0.984034 |
|
Target: 5'- ----aGGCCugaAGCCGGguuAUGAUGCAGGg -3' miRNA: 3'- caaaaCUGG---UCGGCU---UACUGUGUCCa -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 64106 | 0.69 | 0.977359 |
|
Target: 5'- ---aUGACCuGCCGcAUGACACAu-- -3' miRNA: 3'- caaaACUGGuCGGCuUACUGUGUcca -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 5721 | 0.7 | 0.958224 |
|
Target: 5'- ----gGGCgGGcCCGGAUGugACAGGa -3' miRNA: 3'- caaaaCUGgUC-GGCUUACugUGUCCa -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 88250 | 0.71 | 0.940581 |
|
Target: 5'- uGUUUUcACac-CCGAAUGACACAGGUc -3' miRNA: 3'- -CAAAAcUGgucGGCUUACUGUGUCCA- -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 20564 | 0.71 | 0.940581 |
|
Target: 5'- ----cGGCCAGCCGuua-GCACAGGc -3' miRNA: 3'- caaaaCUGGUCGGCuuacUGUGUCCa -5' |
|||||||
| 17367 | 5' | -49.6 | NC_004367.1 | + | 88386 | 1.07 | 0.0137 |
|
Target: 5'- uGUUUUGACCAGCCGAAUGACACAGGUc -3' miRNA: 3'- -CAAAACUGGUCGGCUUACUGUGUCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home