miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17368 5' -53.8 NC_004367.1 + 101531 0.66 0.955638
Target:  5'- aGGAAuuccaGCCAUGCCCAUcauGGCUugUAu -3'
miRNA:   3'- -UCUU-----UGGUAUGGGUGucuCCGGugGU- -5'
17368 5' -53.8 NC_004367.1 + 91342 0.66 0.955638
Target:  5'- uAGAGAUUu--CCU--GGAGGCCACCGc -3'
miRNA:   3'- -UCUUUGGuauGGGugUCUCCGGUGGU- -5'
17368 5' -53.8 NC_004367.1 + 73930 0.66 0.955638
Target:  5'- uGGGAAaUAUGCCUAUaAGAGGCCuCCu -3'
miRNA:   3'- -UCUUUgGUAUGGGUG-UCUCCGGuGGu -5'
17368 5' -53.8 NC_004367.1 + 126586 0.66 0.951573
Target:  5'- cAGAGACCuUACCCACu---GUCACUAg -3'
miRNA:   3'- -UCUUUGGuAUGGGUGucucCGGUGGU- -5'
17368 5' -53.8 NC_004367.1 + 64766 0.66 0.951573
Target:  5'- uAGAugaCAUuCCCcUGGAGGCCACUAu -3'
miRNA:   3'- -UCUuugGUAuGGGuGUCUCCGGUGGU- -5'
17368 5' -53.8 NC_004367.1 + 8656 0.66 0.951573
Target:  5'- gAGAAACguaAUACa-ACAGAGGCaUACCAa -3'
miRNA:   3'- -UCUUUGg--UAUGggUGUCUCCG-GUGGU- -5'
17368 5' -53.8 NC_004367.1 + 120869 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 43503 0.67 0.927561
Target:  5'- uGAuGCUAUugUgGCAGGGGCCgaagaGCCGa -3'
miRNA:   3'- uCUuUGGUAugGgUGUCUCCGG-----UGGU- -5'
17368 5' -53.8 NC_004367.1 + 129597 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 123778 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 126688 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 130019 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 127110 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 124201 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 121292 0.67 0.927561
Target:  5'- uAGGGACUAgGCCgGC--GGGCCGCCu -3'
miRNA:   3'- -UCUUUGGUaUGGgUGucUCCGGUGGu -5'
17368 5' -53.8 NC_004367.1 + 48609 0.68 0.897292
Target:  5'- gAGGAACUcuuuGUuuuaGCUCGCAGccauGGCCACCGg -3'
miRNA:   3'- -UCUUUGG----UA----UGGGUGUCu---CCGGUGGU- -5'
17368 5' -53.8 NC_004367.1 + 30968 0.68 0.893244
Target:  5'- -aGAGCCAacACCCACAaaagugaauaaugauGuAGGCCACCGu -3'
miRNA:   3'- ucUUUGGUa-UGGGUGU---------------C-UCCGGUGGU- -5'
17368 5' -53.8 NC_004367.1 + 64198 0.68 0.886307
Target:  5'- cGAGACacuaaacuccacuuaCAUACCCucguuuACAGAGGUgACCAu -3'
miRNA:   3'- uCUUUG---------------GUAUGGG------UGUCUCCGgUGGU- -5'
17368 5' -53.8 NC_004367.1 + 95432 0.68 0.886307
Target:  5'- gGGAAGCCcuugggacuacacgaGUACCUuauuCAGGGGCUcgaaGCCAa -3'
miRNA:   3'- -UCUUUGG---------------UAUGGGu---GUCUCCGG----UGGU- -5'
17368 5' -53.8 NC_004367.1 + 39224 0.68 0.883466
Target:  5'- ---cACgCGUGCCUcuaACAGcGGCCACCAu -3'
miRNA:   3'- ucuuUG-GUAUGGG---UGUCuCCGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.