miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17369 5' -60 NC_004367.1 + 69886 0.66 0.748551
Target:  5'- ----uGCCUccucuGCCGCCCcUACUGCCu- -3'
miRNA:   3'- ucuuuCGGG-----CGGCGGGuGUGACGGcu -5'
17369 5' -60 NC_004367.1 + 5436 0.66 0.719744
Target:  5'- --cAAGCuCUGCCGCUC-CAUgGCCGAu -3'
miRNA:   3'- ucuUUCG-GGCGGCGGGuGUGaCGGCU- -5'
17369 5' -60 NC_004367.1 + 9754 0.66 0.719744
Target:  5'- gGGGAGGauaCCaGCCGCCuCACAgCUGUaCGAg -3'
miRNA:   3'- -UCUUUCg--GG-CGGCGG-GUGU-GACG-GCU- -5'
17369 5' -60 NC_004367.1 + 23442 0.66 0.709985
Target:  5'- uGGGccGGGCCUGgaGCCC-CACgGCCGGg -3'
miRNA:   3'- -UCU--UUCGGGCggCGGGuGUGaCGGCU- -5'
17369 5' -60 NC_004367.1 + 56804 0.66 0.709985
Target:  5'- uGGGccGGGCCUGgaGCCC-CACgGCCGGg -3'
miRNA:   3'- -UCU--UUCGGGCggCGGGuGUGaCGGCU- -5'
17369 5' -60 NC_004367.1 + 9977 0.67 0.680363
Target:  5'- --uAAGcCCCGCCucGUCUACAC-GCCGAa -3'
miRNA:   3'- ucuUUC-GGGCGG--CGGGUGUGaCGGCU- -5'
17369 5' -60 NC_004367.1 + 143623 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 143950 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 144278 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 142640 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 142312 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 141984 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 141657 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 141329 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 141001 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 140674 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 145916 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 145589 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 144933 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 145261 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.