miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17369 5' -60 NC_004367.1 + 143623 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 143950 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 144278 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 144606 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 144933 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 145261 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 145589 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 145916 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 146244 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 146572 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 146899 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 147227 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 147555 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 147882 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 148210 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 148538 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 148865 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5'
17369 5' -60 NC_004367.1 + 149193 0.67 0.650396
Target:  5'- uGGAGGCCaCGCCcCCCuCACUuuuuucugGCCGGc -3'
miRNA:   3'- uCUUUCGG-GCGGcGGGuGUGA--------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.