miRNA display CGI


Results 1 - 20 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 178876 0.66 0.997814
Target:  5'- aGAGCGAguuguccuCGuCGCCGCCGcUGCCg -3'
miRNA:   3'- gUUUGUUguuu----GUcGCGGCGGC-ACGG- -5'
1737 3' -51.5 NC_001347.2 + 156796 0.66 0.997814
Target:  5'- aAGGCGGC-AGCGGCaGCgGCgG-GCCa -3'
miRNA:   3'- gUUUGUUGuUUGUCG-CGgCGgCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 13125 0.66 0.997814
Target:  5'- --cGCgAACAAACAGC-CCGCUacggGCCc -3'
miRNA:   3'- guuUG-UUGUUUGUCGcGGCGGca--CGG- -5'
1737 3' -51.5 NC_001347.2 + 150985 0.66 0.997814
Target:  5'- aCAAGgAACAGAUGGCGCUcaaaGUaaCGUGCa -3'
miRNA:   3'- -GUUUgUUGUUUGUCGCGG----CG--GCACGg -5'
1737 3' -51.5 NC_001347.2 + 48778 0.66 0.997814
Target:  5'- --uACAGCAGAUAcauGCGUCGUa-UGCCg -3'
miRNA:   3'- guuUGUUGUUUGU---CGCGGCGgcACGG- -5'
1737 3' -51.5 NC_001347.2 + 192189 0.66 0.997776
Target:  5'- uGAGCGGCc-GCGGCGCgggcucggcguccCGCCGU-CCg -3'
miRNA:   3'- gUUUGUUGuuUGUCGCG-------------GCGGCAcGG- -5'
1737 3' -51.5 NC_001347.2 + 87988 0.66 0.997411
Target:  5'- -uGACGugGAGuCGGCcuccaCCGCCGUGgCg -3'
miRNA:   3'- guUUGUugUUU-GUCGc----GGCGGCACgG- -5'
1737 3' -51.5 NC_001347.2 + 148597 0.66 0.997411
Target:  5'- uGAGCGGCGgcgugaccGGCGGUGCgGUCGcgggugGCCg -3'
miRNA:   3'- gUUUGUUGU--------UUGUCGCGgCGGCa-----CGG- -5'
1737 3' -51.5 NC_001347.2 + 189344 0.66 0.997411
Target:  5'- uCAGACGccCGAGCAGuCGaCGCCGU-CCa -3'
miRNA:   3'- -GUUUGUu-GUUUGUC-GCgGCGGCAcGG- -5'
1737 3' -51.5 NC_001347.2 + 124942 0.66 0.997411
Target:  5'- gUAGGCAGCGucucuuGCGGCGCCGacuccuUGUagcGCCg -3'
miRNA:   3'- -GUUUGUUGUu-----UGUCGCGGCg-----GCA---CGG- -5'
1737 3' -51.5 NC_001347.2 + 228916 0.66 0.997411
Target:  5'- gCAAGCAGCGuagucuGCGGCGUCGagcuccauCUGUGUg -3'
miRNA:   3'- -GUUUGUUGUu-----UGUCGCGGC--------GGCACGg -5'
1737 3' -51.5 NC_001347.2 + 127981 0.66 0.997411
Target:  5'- aAGACGACGGcuauuucauGCAuCGCCGuCUGUuGCCg -3'
miRNA:   3'- gUUUGUUGUU---------UGUcGCGGC-GGCA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 6206 0.66 0.997411
Target:  5'- -cGGCGGCGAAacaacCAGCGCCGgguaCUGUGgCg -3'
miRNA:   3'- guUUGUUGUUU-----GUCGCGGC----GGCACgG- -5'
1737 3' -51.5 NC_001347.2 + 136027 0.66 0.997411
Target:  5'- ----gAGCGGGCcGCGCC-CgGUGCCc -3'
miRNA:   3'- guuugUUGUUUGuCGCGGcGgCACGG- -5'
1737 3' -51.5 NC_001347.2 + 165271 0.66 0.997411
Target:  5'- aAAGCGGgcGACAGCuGCaCGCCGaaGCCc -3'
miRNA:   3'- gUUUGUUguUUGUCG-CG-GCGGCa-CGG- -5'
1737 3' -51.5 NC_001347.2 + 208424 0.66 0.997411
Target:  5'- gUAGAU----GAUAGCGCCGCCuagcGCCg -3'
miRNA:   3'- -GUUUGuuguUUGUCGCGGCGGca--CGG- -5'
1737 3' -51.5 NC_001347.2 + 197132 0.66 0.997411
Target:  5'- gGAACu-CGGGCc-CGCCGUCGUcGCCg -3'
miRNA:   3'- gUUUGuuGUUUGucGCGGCGGCA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 152713 0.66 0.997323
Target:  5'- uGAGCGugAcGCuguagucuucgcGCGCCGCCGUGa- -3'
miRNA:   3'- gUUUGUugUuUGu-----------CGCGGCGGCACgg -5'
1737 3' -51.5 NC_001347.2 + 84980 0.66 0.997141
Target:  5'- aCGAugAGCAGgagcgggauguggucGCAGUGgaaaacgcgaCCGCCG-GCCa -3'
miRNA:   3'- -GUUugUUGUU---------------UGUCGC----------GGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 152370 0.66 0.996948
Target:  5'- gUAGugGugGGGCuGCGUCGCC-UGCg -3'
miRNA:   3'- -GUUugUugUUUGuCGCGGCGGcACGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.