miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 71071 1.12 0.007159
Target:  5'- cCAAACAACAAACAGCGCCGCCGUGCCu -3'
miRNA:   3'- -GUUUGUUGUUUGUCGCGGCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 39283 0.83 0.389096
Target:  5'- gAGACAGCAAcaGGCGCUccggGCCGUGCCa -3'
miRNA:   3'- gUUUGUUGUUugUCGCGG----CGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 161573 0.8 0.517776
Target:  5'- -uGAUGACGcGCGGCGCCGCCG-GCUa -3'
miRNA:   3'- guUUGUUGUuUGUCGCGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 87007 0.8 0.537614
Target:  5'- --cGCGGCAGGCcGCGCCGgCGUGCUu -3'
miRNA:   3'- guuUGUUGUUUGuCGCGGCgGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 80966 0.79 0.567837
Target:  5'- gCGGACuACcacCGGCGCCGCCGUuGCCg -3'
miRNA:   3'- -GUUUGuUGuuuGUCGCGGCGGCA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 62756 0.79 0.576991
Target:  5'- -uGACGACGAGCGGCGgccgaccCCGCCGUugcgGCCg -3'
miRNA:   3'- guUUGUUGUUUGUCGC-------GGCGGCA----CGG- -5'
1737 3' -51.5 NC_001347.2 + 30582 0.79 0.608739
Target:  5'- aCAGACGACGcgccgGGCGGCuuccugcggccgGCCGCgGUGCCg -3'
miRNA:   3'- -GUUUGUUGU-----UUGUCG------------CGGCGgCACGG- -5'
1737 3' -51.5 NC_001347.2 + 79175 0.78 0.619028
Target:  5'- gCAGACGAgGAGCGGCGCgGCCcagagcGUGUCg -3'
miRNA:   3'- -GUUUGUUgUUUGUCGCGgCGG------CACGG- -5'
1737 3' -51.5 NC_001347.2 + 81631 0.78 0.619028
Target:  5'- ----aGACGcACGGCGCCGCCGccgGCCu -3'
miRNA:   3'- guuugUUGUuUGUCGCGGCGGCa--CGG- -5'
1737 3' -51.5 NC_001347.2 + 130888 0.78 0.648892
Target:  5'- -cGACGGCAAcccagcaGCAGCaGCCGCCGccGCCa -3'
miRNA:   3'- guUUGUUGUU-------UGUCG-CGGCGGCa-CGG- -5'
1737 3' -51.5 NC_001347.2 + 203890 0.78 0.649921
Target:  5'- cCAAGgGACGAGCAGcCGCCG-CGUGCg -3'
miRNA:   3'- -GUUUgUUGUUUGUC-GCGGCgGCACGg -5'
1737 3' -51.5 NC_001347.2 + 2091 0.78 0.649921
Target:  5'- --cGCAGCcguACGGCGCCGCCG-GCg -3'
miRNA:   3'- guuUGUUGuu-UGUCGCGGCGGCaCGg -5'
1737 3' -51.5 NC_001347.2 + 66691 0.78 0.660201
Target:  5'- aGGACGACGAcgauGCAGCcuGCCGCCG-GCUg -3'
miRNA:   3'- gUUUGUUGUU----UGUCG--CGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 164361 0.78 0.660201
Target:  5'- ----aGGCGAugAGCGCCggGCCGUGCUg -3'
miRNA:   3'- guuugUUGUUugUCGCGG--CGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 116659 0.77 0.680684
Target:  5'- --uGCAugAGcACGGCGCCGCCGccgucGCCa -3'
miRNA:   3'- guuUGUugUU-UGUCGCGGCGGCa----CGG- -5'
1737 3' -51.5 NC_001347.2 + 160959 0.77 0.69087
Target:  5'- --cGCuAC-AGCGGCGCCGCCaUGCCa -3'
miRNA:   3'- guuUGuUGuUUGUCGCGGCGGcACGG- -5'
1737 3' -51.5 NC_001347.2 + 2205 0.77 0.701005
Target:  5'- -cGACAGCGAuggcggguccgGCGGCGUCGgggaCCGUGCCg -3'
miRNA:   3'- guUUGUUGUU-----------UGUCGCGGC----GGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 85642 0.77 0.701005
Target:  5'- -cAACAGCGAggccACGGcCGCCGCguCGUGCCu -3'
miRNA:   3'- guUUGUUGUU----UGUC-GCGGCG--GCACGG- -5'
1737 3' -51.5 NC_001347.2 + 86186 0.77 0.710078
Target:  5'- uGAGCcACAcgUAGUcguccgaGCCGCCGUGCCg -3'
miRNA:   3'- gUUUGuUGUuuGUCG-------CGGCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 113425 0.76 0.730034
Target:  5'- -cGACAGCAGugcugccGCAGCGCUGCCacuGUGCa -3'
miRNA:   3'- guUUGUUGUU-------UGUCGCGGCGG---CACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.