miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 67645 0.76 0.731023
Target:  5'- -cAGCGACAuGCGGcCGCUGCCGccGCCa -3'
miRNA:   3'- guUUGUUGUuUGUC-GCGGCGGCa-CGG- -5'
1737 3' -51.5 NC_001347.2 + 170133 0.76 0.731023
Target:  5'- ----uGACGcguGACAGCGgucCCGCCGUGCCc -3'
miRNA:   3'- guuugUUGU---UUGUCGC---GGCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 38657 0.76 0.731023
Target:  5'- ---cCGGCGucuGCAGCGCCaccGUCGUGCCg -3'
miRNA:   3'- guuuGUUGUu--UGUCGCGG---CGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 131720 0.76 0.740868
Target:  5'- gAGACGACGAcCGGcCGUCGCCGccGCCg -3'
miRNA:   3'- gUUUGUUGUUuGUC-GCGGCGGCa-CGG- -5'
1737 3' -51.5 NC_001347.2 + 150401 0.76 0.740868
Target:  5'- ----aAACGAAUAGCGuuGCUGUGUCa -3'
miRNA:   3'- guuugUUGUUUGUCGCggCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 81573 0.76 0.749647
Target:  5'- -cGGCAACAGcCAGCgacgaucGCCGCCG-GCCg -3'
miRNA:   3'- guUUGUUGUUuGUCG-------CGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 80262 0.76 0.76026
Target:  5'- aAGACGGaggAGACAcCGUCGCCGUGCCc -3'
miRNA:   3'- gUUUGUUg--UUUGUcGCGGCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 13526 0.75 0.779193
Target:  5'- cCGGGCGGCc--CGG-GCCGCCGUGCUg -3'
miRNA:   3'- -GUUUGUUGuuuGUCgCGGCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 102590 0.75 0.797592
Target:  5'- aAAACAGCgAAACGGUGgCGCUGUGUa -3'
miRNA:   3'- gUUUGUUG-UUUGUCGCgGCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 85323 0.75 0.806569
Target:  5'- gCAggUggUGAuCAGCGCCGCCGccagcGCCg -3'
miRNA:   3'- -GUuuGuuGUUuGUCGCGGCGGCa----CGG- -5'
1737 3' -51.5 NC_001347.2 + 191132 0.74 0.815385
Target:  5'- cCAcGCGACAuAGCAGCGUcgCGCCaUGCCg -3'
miRNA:   3'- -GUuUGUUGU-UUGUCGCG--GCGGcACGG- -5'
1737 3' -51.5 NC_001347.2 + 158651 0.74 0.815385
Target:  5'- aAAGCGA-GGACGGCGCCccGCUGUGUCg -3'
miRNA:   3'- gUUUGUUgUUUGUCGCGG--CGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 115001 0.74 0.823176
Target:  5'- --cGCuGCcguACAGCGCCGCCGcucauaaUGCCg -3'
miRNA:   3'- guuUGuUGuu-UGUCGCGGCGGC-------ACGG- -5'
1737 3' -51.5 NC_001347.2 + 168457 0.74 0.823176
Target:  5'- aGAACGGCAAcCGGUccucgucuccgccGCCGUCGUGCUg -3'
miRNA:   3'- gUUUGUUGUUuGUCG-------------CGGCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 124766 0.74 0.824033
Target:  5'- aGGACAGCAA--GGcCGCCGCCGUGg- -3'
miRNA:   3'- gUUUGUUGUUugUC-GCGGCGGCACgg -5'
1737 3' -51.5 NC_001347.2 + 12340 0.74 0.824033
Target:  5'- --uACGGCGAGCAaauGCGCaCGCCGcUGCUa -3'
miRNA:   3'- guuUGUUGUUUGU---CGCG-GCGGC-ACGG- -5'
1737 3' -51.5 NC_001347.2 + 229887 0.74 0.840791
Target:  5'- aCAGAC-ACAGACAcGCGUcuucuuuuCGCCGUGCg -3'
miRNA:   3'- -GUUUGuUGUUUGU-CGCG--------GCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 408 0.74 0.840791
Target:  5'- aCAGAC-ACAGACAcGCGUcuucuuuuCGCCGUGCg -3'
miRNA:   3'- -GUUUGuUGUUUGU-CGCG--------GCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 178747 0.74 0.840791
Target:  5'- --cGCAACGGguGCuguccGCGCCGCCGaGCCu -3'
miRNA:   3'- guuUGUUGUU--UGu----CGCGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 2001 0.74 0.840791
Target:  5'- -cAGCGGCGAGCGGCacggagacggagGCCGCCG-GCg -3'
miRNA:   3'- guUUGUUGUUUGUCG------------CGGCGGCaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.