miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 75051 0.66 0.996948
Target:  5'- aCGAGCGGCAAcgugGCgaAGCGaCCGcCCGUGagaCg -3'
miRNA:   3'- -GUUUGUUGUU----UG--UCGC-GGC-GGCACg--G- -5'
1737 3' -51.5 NC_001347.2 + 19606 0.66 0.996948
Target:  5'- uUAGACGAaucuCGGCGauaaCCGCCGgcguUGCCg -3'
miRNA:   3'- -GUUUGUUguuuGUCGC----GGCGGC----ACGG- -5'
1737 3' -51.5 NC_001347.2 + 193647 0.66 0.996948
Target:  5'- uCGGGC--CGAGCuGUGCCGCCGcucgcgcGCCu -3'
miRNA:   3'- -GUUUGuuGUUUGuCGCGGCGGCa------CGG- -5'
1737 3' -51.5 NC_001347.2 + 152370 0.66 0.996948
Target:  5'- gUAGugGugGGGCuGCGUCGCC-UGCg -3'
miRNA:   3'- -GUUugUugUUUGuCGCGGCGGcACGg -5'
1737 3' -51.5 NC_001347.2 + 136082 0.66 0.996948
Target:  5'- gGGACGggcccGCGGACGGacCGgCGCCGgGCCu -3'
miRNA:   3'- gUUUGU-----UGUUUGUC--GCgGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 11993 0.66 0.996419
Target:  5'- aGGACAuCuuuGGCAGCGCgGCUGUcaccgacggGCCc -3'
miRNA:   3'- gUUUGUuGu--UUGUCGCGgCGGCA---------CGG- -5'
1737 3' -51.5 NC_001347.2 + 107622 0.66 0.996419
Target:  5'- uGAGCGACGAgaACGGCGCCa-CGUuCCc -3'
miRNA:   3'- gUUUGUUGUU--UGUCGCGGcgGCAcGG- -5'
1737 3' -51.5 NC_001347.2 + 158165 0.66 0.996419
Target:  5'- gCGAGCGcCAucugGACGcGCGCuCGCUGgugGCCg -3'
miRNA:   3'- -GUUUGUuGU----UUGU-CGCG-GCGGCa--CGG- -5'
1737 3' -51.5 NC_001347.2 + 151875 0.66 0.996419
Target:  5'- -uGACGGCGcccgguguccgGACGGCGCCGCaggGUuCCu -3'
miRNA:   3'- guUUGUUGU-----------UUGUCGCGGCGg--CAcGG- -5'
1737 3' -51.5 NC_001347.2 + 108153 0.66 0.996419
Target:  5'- aAGGCGGCGGccGCAgagggcGCGCCGCUcaGUcGCCu -3'
miRNA:   3'- gUUUGUUGUU--UGU------CGCGGCGG--CA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 197849 0.66 0.996419
Target:  5'- -cGGCAACGugccauCAGCGCUGU--UGCCg -3'
miRNA:   3'- guUUGUUGUuu----GUCGCGGCGgcACGG- -5'
1737 3' -51.5 NC_001347.2 + 128458 0.66 0.996419
Target:  5'- uCAAGCGGCGcGACGGCGCgCGCaCGcgggauuuucgcUGUCu -3'
miRNA:   3'- -GUUUGUUGU-UUGUCGCG-GCG-GC------------ACGG- -5'
1737 3' -51.5 NC_001347.2 + 214699 0.66 0.996362
Target:  5'- -cGGCGGCGAACAGCaGCaucgcgaCGCCccagcUGCCg -3'
miRNA:   3'- guUUGUUGUUUGUCG-CG-------GCGGc----ACGG- -5'
1737 3' -51.5 NC_001347.2 + 17102 0.66 0.996362
Target:  5'- gAAACGAC-GGCcGCGCCaugccggucguccGCCGUcgGCCg -3'
miRNA:   3'- gUUUGUUGuUUGuCGCGG-------------CGGCA--CGG- -5'
1737 3' -51.5 NC_001347.2 + 145410 0.66 0.995816
Target:  5'- --uAUAACAAAgAGUgGCCGCUGcUGCUu -3'
miRNA:   3'- guuUGUUGUUUgUCG-CGGCGGC-ACGG- -5'
1737 3' -51.5 NC_001347.2 + 150904 0.66 0.995816
Target:  5'- ---uCAACAAguggguuucGCAGCgGCgUGCCGUGCg -3'
miRNA:   3'- guuuGUUGUU---------UGUCG-CG-GCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 112481 0.66 0.995816
Target:  5'- aGGACGAC-GACGaCGCCGCCGcgGUUu -3'
miRNA:   3'- gUUUGUUGuUUGUcGCGGCGGCa-CGG- -5'
1737 3' -51.5 NC_001347.2 + 162550 0.66 0.995816
Target:  5'- --uGCGGguGACAGCGCCGCucuacaucaccCGUcagcacGCCg -3'
miRNA:   3'- guuUGUUguUUGUCGCGGCG-----------GCA------CGG- -5'
1737 3' -51.5 NC_001347.2 + 96351 0.66 0.995816
Target:  5'- ----gGACGAACuGCGCauCGCCGUGg- -3'
miRNA:   3'- guuugUUGUUUGuCGCG--GCGGCACgg -5'
1737 3' -51.5 NC_001347.2 + 38590 0.66 0.995816
Target:  5'- gCGAACGGCucguACuGCGCCaGCuCcUGCCa -3'
miRNA:   3'- -GUUUGUUGuu--UGuCGCGG-CG-GcACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.