miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 96351 0.66 0.995816
Target:  5'- ----gGACGAACuGCGCauCGCCGUGg- -3'
miRNA:   3'- guuugUUGUUUGuCGCG--GCGGCACgg -5'
1737 3' -51.5 NC_001347.2 + 162550 0.66 0.995816
Target:  5'- --uGCGGguGACAGCGCCGCucuacaucaccCGUcagcacGCCg -3'
miRNA:   3'- guuUGUUguUUGUCGCGGCG-----------GCA------CGG- -5'
1737 3' -51.5 NC_001347.2 + 112481 0.66 0.995816
Target:  5'- aGGACGAC-GACGaCGCCGCCGcgGUUu -3'
miRNA:   3'- gUUUGUUGuUUGUcGCGGCGGCa-CGG- -5'
1737 3' -51.5 NC_001347.2 + 150904 0.66 0.995816
Target:  5'- ---uCAACAAguggguuucGCAGCgGCgUGCCGUGCg -3'
miRNA:   3'- guuuGUUGUU---------UGUCG-CG-GCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 145410 0.66 0.995816
Target:  5'- --uAUAACAAAgAGUgGCCGCUGcUGCUu -3'
miRNA:   3'- guuUGUUGUUUgUCG-CGGCGGC-ACGG- -5'
1737 3' -51.5 NC_001347.2 + 149112 0.66 0.995816
Target:  5'- cCGAACcGCGGAC-GCcauaCGCCGUGUCu -3'
miRNA:   3'- -GUUUGuUGUUUGuCGcg--GCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 74686 0.66 0.995752
Target:  5'- uCGAGCGACAGGCccugacucuuGGCGauggucaUgGCCGUGCg -3'
miRNA:   3'- -GUUUGUUGUUUG----------UCGC-------GgCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 106301 0.66 0.995686
Target:  5'- nCGAGCucugu-CGGCGCCGCCGcucacuuuccucGCCa -3'
miRNA:   3'- -GUUUGuuguuuGUCGCGGCGGCa-----------CGG- -5'
1737 3' -51.5 NC_001347.2 + 100164 0.66 0.99562
Target:  5'- aGAGCAGCuuguagugaaccugGAugcGCGGCGCCGCg--GCCu -3'
miRNA:   3'- gUUUGUUG--------------UU---UGUCGCGGCGgcaCGG- -5'
1737 3' -51.5 NC_001347.2 + 69494 0.66 0.995416
Target:  5'- uGGACGACAcuGCGGCuuuguauucuuuaucGUCGUCGUcGCCg -3'
miRNA:   3'- gUUUGUUGUu-UGUCG---------------CGGCGGCA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 103654 0.66 0.995133
Target:  5'- uGGACcACGcGCAGCGUCaggGCC-UGCCg -3'
miRNA:   3'- gUUUGuUGUuUGUCGCGG---CGGcACGG- -5'
1737 3' -51.5 NC_001347.2 + 157797 0.66 0.995133
Target:  5'- cCAGugGuguCAccAACGGCaGCCGCgGUcGCCg -3'
miRNA:   3'- -GUUugUu--GU--UUGUCG-CGGCGgCA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 170747 0.66 0.995133
Target:  5'- aCGGACAGgacgagagccCGGGCGGCGUguuuuugcgcauCGCCGUGgCg -3'
miRNA:   3'- -GUUUGUU----------GUUUGUCGCG------------GCGGCACgG- -5'
1737 3' -51.5 NC_001347.2 + 81860 0.66 0.995133
Target:  5'- gAAAgAACGGGCGGCGCCcgucucaaagagGuCCG-GCCc -3'
miRNA:   3'- gUUUgUUGUUUGUCGCGG------------C-GGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 198563 0.66 0.995133
Target:  5'- aAAAaguCAAACAaCGCCGgCGUGCUc -3'
miRNA:   3'- gUUUguuGUUUGUcGCGGCgGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 229270 0.66 0.995133
Target:  5'- --cGCAACAcccCGGCaUCGCCGgcgGCCa -3'
miRNA:   3'- guuUGUUGUuu-GUCGcGGCGGCa--CGG- -5'
1737 3' -51.5 NC_001347.2 + 210491 0.66 0.99506
Target:  5'- aAAGCGGCGgucgguccaggucAACGGCGUuuCGCCGcGUCa -3'
miRNA:   3'- gUUUGUUGU-------------UUGUCGCG--GCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 156006 0.67 0.994362
Target:  5'- ---cCAGCGAGCuGCGCgucaccgaUGCCG-GCCu -3'
miRNA:   3'- guuuGUUGUUUGuCGCG--------GCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 132931 0.67 0.994362
Target:  5'- gCAAACGAUGGugAGagGUCGCCaccgagggGUGCCu -3'
miRNA:   3'- -GUUUGUUGUUugUCg-CGGCGG--------CACGG- -5'
1737 3' -51.5 NC_001347.2 + 111659 0.67 0.994362
Target:  5'- gCAGACAuc-AGCAGCacguuGCgGuCCGUGCCc -3'
miRNA:   3'- -GUUUGUuguUUGUCG-----CGgC-GGCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.