miRNA display CGI


Results 1 - 20 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 408 0.74 0.840791
Target:  5'- aCAGAC-ACAGACAcGCGUcuucuuuuCGCCGUGCg -3'
miRNA:   3'- -GUUUGuUGUUUGU-CGCG--------GCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 700 0.72 0.905351
Target:  5'- cCAGACuGCGuggcgccaaGGCGGCGCCagcacgcGCCGUGCa -3'
miRNA:   3'- -GUUUGuUGU---------UUGUCGCGG-------CGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 785 0.68 0.984061
Target:  5'- aCGGGCGACGAA-GGCGuCCGC-GUGUCu -3'
miRNA:   3'- -GUUUGUUGUUUgUCGC-GGCGgCACGG- -5'
1737 3' -51.5 NC_001347.2 + 882 0.67 0.992525
Target:  5'- ---cCAGCGcAACGGCauGUCGCCGcGCCc -3'
miRNA:   3'- guuuGUUGU-UUGUCG--CGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 1704 0.7 0.966385
Target:  5'- gAGGCGACGgcgcucggacgggAGCuGCGCCGgCGguggGCCg -3'
miRNA:   3'- gUUUGUUGU-------------UUGuCGCGGCgGCa---CGG- -5'
1737 3' -51.5 NC_001347.2 + 2001 0.74 0.840791
Target:  5'- -cAGCGGCGAGCGGCacggagacggagGCCGCCG-GCg -3'
miRNA:   3'- guUUGUUGUUUGUCG------------CGGCGGCaCGg -5'
1737 3' -51.5 NC_001347.2 + 2091 0.78 0.649921
Target:  5'- --cGCAGCcguACGGCGCCGCCG-GCg -3'
miRNA:   3'- guuUGUUGuu-UGUCGCGGCGGCaCGg -5'
1737 3' -51.5 NC_001347.2 + 2169 0.7 0.959925
Target:  5'- -cGGCAGCAgcAGCGGCGCCGaCgGUGa- -3'
miRNA:   3'- guUUGUUGU--UUGUCGCGGC-GgCACgg -5'
1737 3' -51.5 NC_001347.2 + 2205 0.77 0.701005
Target:  5'- -cGACAGCGAuggcggguccgGCGGCGUCGgggaCCGUGCCg -3'
miRNA:   3'- guUUGUUGUU-----------UGUCGCGGC----GGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 2380 0.72 0.917945
Target:  5'- gGGAC-GCGAGuCGGCGcCCGCCGccgagGCCg -3'
miRNA:   3'- gUUUGuUGUUU-GUCGC-GGCGGCa----CGG- -5'
1737 3' -51.5 NC_001347.2 + 2433 0.68 0.987442
Target:  5'- uGGACcGCGAGCAGUgggaGCgGCCGcGCUg -3'
miRNA:   3'- gUUUGuUGUUUGUCG----CGgCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 4136 0.68 0.98891
Target:  5'- ---uCAAUAAaacACA-CGCCGCCGUGaCCc -3'
miRNA:   3'- guuuGUUGUU---UGUcGCGGCGGCAC-GG- -5'
1737 3' -51.5 NC_001347.2 + 5759 0.69 0.975287
Target:  5'- aAAACAccACAAACGGUGuaaCCGCCGcaucUGUCg -3'
miRNA:   3'- gUUUGU--UGUUUGUCGC---GGCGGC----ACGG- -5'
1737 3' -51.5 NC_001347.2 + 6206 0.66 0.997411
Target:  5'- -cGGCGGCGAAacaacCAGCGCCGgguaCUGUGgCg -3'
miRNA:   3'- guUUGUUGUUU-----GUCGCGGC----GGCACgG- -5'
1737 3' -51.5 NC_001347.2 + 6857 0.69 0.972629
Target:  5'- gAAACGGCGuGCA--GCCGCCGaGCCc -3'
miRNA:   3'- gUUUGUUGUuUGUcgCGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 8214 0.68 0.984061
Target:  5'- aGGACAGCGGcGCAuacccaCGCCGCCGUGg- -3'
miRNA:   3'- gUUUGUUGUU-UGUc-----GCGGCGGCACgg -5'
1737 3' -51.5 NC_001347.2 + 11993 0.66 0.996419
Target:  5'- aGGACAuCuuuGGCAGCGCgGCUGUcaccgacggGCCc -3'
miRNA:   3'- gUUUGUuGu--UUGUCGCGgCGGCA---------CGG- -5'
1737 3' -51.5 NC_001347.2 + 12340 0.74 0.824033
Target:  5'- --uACGGCGAGCAaauGCGCaCGCCGcUGCUa -3'
miRNA:   3'- guuUGUUGUUUGU---CGCG-GCGGC-ACGG- -5'
1737 3' -51.5 NC_001347.2 + 13125 0.66 0.997814
Target:  5'- --cGCgAACAAACAGC-CCGCUacggGCCc -3'
miRNA:   3'- guuUG-UUGUUUGUCGcGGCGGca--CGG- -5'
1737 3' -51.5 NC_001347.2 + 13526 0.75 0.779193
Target:  5'- cCGGGCGGCc--CGG-GCCGCCGUGCUg -3'
miRNA:   3'- -GUUUGUUGuuuGUCgCGGCGGCACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.