miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 14278 0.68 0.983876
Target:  5'- -uGACGGCGcuGCAGUuauGCCGCCGgagcuccccgcgcUGCCu -3'
miRNA:   3'- guUUGUUGUu-UGUCG---CGGCGGC-------------ACGG- -5'
1737 3' -51.5 NC_001347.2 + 15958 0.7 0.955817
Target:  5'- aGGGCAucuuCAGugccaguACAGCGCCGaCGUGCUu -3'
miRNA:   3'- gUUUGUu---GUU-------UGUCGCGGCgGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 17102 0.66 0.996362
Target:  5'- gAAACGAC-GGCcGCGCCaugccggucguccGCCGUcgGCCg -3'
miRNA:   3'- gUUUGUUGuUUGuCGCGG-------------CGGCA--CGG- -5'
1737 3' -51.5 NC_001347.2 + 18913 0.68 0.98891
Target:  5'- -cAACAAC-AGCAGCGCaugggGCCGcacggaccuacUGCCc -3'
miRNA:   3'- guUUGUUGuUUGUCGCGg----CGGC-----------ACGG- -5'
1737 3' -51.5 NC_001347.2 + 19606 0.66 0.996948
Target:  5'- uUAGACGAaucuCGGCGauaaCCGCCGgcguUGCCg -3'
miRNA:   3'- -GUUUGUUguuuGUCGC----GGCGGC----ACGG- -5'
1737 3' -51.5 NC_001347.2 + 20311 0.67 0.993495
Target:  5'- uCAGACGACGgucgcugccacAGCAGCGgCGUCGccCCa -3'
miRNA:   3'- -GUUUGUUGU-----------UUGUCGCgGCGGCacGG- -5'
1737 3' -51.5 NC_001347.2 + 22714 0.67 0.99428
Target:  5'- --uACAGCGGACucuacguccugguGGUGaCCGCCGcuucgGCCg -3'
miRNA:   3'- guuUGUUGUUUG-------------UCGC-GGCGGCa----CGG- -5'
1737 3' -51.5 NC_001347.2 + 24319 0.68 0.98877
Target:  5'- -cAACAACGAcgacuaugaugaaGCGGCcgugGUgGCCGUGCUg -3'
miRNA:   3'- guUUGUUGUU-------------UGUCG----CGgCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 26034 0.67 0.990241
Target:  5'- gAGACcuuGCGGAUA-CGCCGCCGggcGCUg -3'
miRNA:   3'- gUUUGu--UGUUUGUcGCGGCGGCa--CGG- -5'
1737 3' -51.5 NC_001347.2 + 29385 0.68 0.984061
Target:  5'- gUAGAguGCGAACcccGGUGCC-UCGUGCCu -3'
miRNA:   3'- -GUUUguUGUUUG---UCGCGGcGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 30582 0.79 0.608739
Target:  5'- aCAGACGACGcgccgGGCGGCuuccugcggccgGCCGCgGUGCCg -3'
miRNA:   3'- -GUUUGUUGU-----UUGUCG------------CGGCGgCACGG- -5'
1737 3' -51.5 NC_001347.2 + 34326 0.71 0.943647
Target:  5'- uGGGCGGCGAugagaacguCAGCGguggcgaaaCCGCCGUGCg -3'
miRNA:   3'- gUUUGUUGUUu--------GUCGC---------GGCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 36854 0.66 0.995816
Target:  5'- -uGACGGCGAuCAGCaGCCGUgGUGg- -3'
miRNA:   3'- guUUGUUGUUuGUCG-CGGCGgCACgg -5'
1737 3' -51.5 NC_001347.2 + 37995 0.73 0.871948
Target:  5'- -cAGCu-CGGGCAGCaGCCGCCGcgcgGCCu -3'
miRNA:   3'- guUUGuuGUUUGUCG-CGGCGGCa---CGG- -5'
1737 3' -51.5 NC_001347.2 + 38222 0.66 0.995816
Target:  5'- uCGAACccacCAucaccguCGGCGCCGCUGcugcUGCCg -3'
miRNA:   3'- -GUUUGuu--GUuu-----GUCGCGGCGGC----ACGG- -5'
1737 3' -51.5 NC_001347.2 + 38293 0.68 0.98891
Target:  5'- uUAGGCAcGCAAAUcGCGCCcccGCCGgcggcGCCg -3'
miRNA:   3'- -GUUUGU-UGUUUGuCGCGG---CGGCa----CGG- -5'
1737 3' -51.5 NC_001347.2 + 38491 0.7 0.966703
Target:  5'- gCGGGCAGCAccgcgccCAGCGCCaGCCa-GCCg -3'
miRNA:   3'- -GUUUGUUGUuu-----GUCGCGG-CGGcaCGG- -5'
1737 3' -51.5 NC_001347.2 + 38590 0.66 0.995816
Target:  5'- gCGAACGGCucguACuGCGCCaGCuCcUGCCa -3'
miRNA:   3'- -GUUUGUUGuu--UGuCGCGG-CG-GcACGG- -5'
1737 3' -51.5 NC_001347.2 + 38657 0.76 0.731023
Target:  5'- ---cCGGCGucuGCAGCGCCaccGUCGUGCCg -3'
miRNA:   3'- guuuGUUGUu--UGUCGCGG---CGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 38804 0.74 0.848085
Target:  5'- --uGCAGCGGuACAGcCGCaccaccucgcccgCGCCGUGCCg -3'
miRNA:   3'- guuUGUUGUU-UGUC-GCG-------------GCGGCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.