miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 3' -51.5 NC_001347.2 + 229887 0.74 0.840791
Target:  5'- aCAGAC-ACAGACAcGCGUcuucuuuuCGCCGUGCg -3'
miRNA:   3'- -GUUUGuUGUUUGU-CGCG--------GCGGCACGg -5'
1737 3' -51.5 NC_001347.2 + 229270 0.66 0.995133
Target:  5'- --cGCAACAcccCGGCaUCGCCGgcgGCCa -3'
miRNA:   3'- guuUGUUGUuu-GUCGcGGCGGCa--CGG- -5'
1737 3' -51.5 NC_001347.2 + 228916 0.66 0.997411
Target:  5'- gCAAGCAGCGuagucuGCGGCGUCGagcuccauCUGUGUg -3'
miRNA:   3'- -GUUUGUUGUu-----UGUCGCGGC--------GGCACGg -5'
1737 3' -51.5 NC_001347.2 + 225571 0.67 0.990241
Target:  5'- aGAACGGCGguGACuuaGCCGCCcGUGgCCg -3'
miRNA:   3'- gUUUGUUGU--UUGucgCGGCGG-CAC-GG- -5'
1737 3' -51.5 NC_001347.2 + 222825 0.69 0.980031
Target:  5'- --cGCAGCuguAGCAGUuaacGUCGCCG-GCCu -3'
miRNA:   3'- guuUGUUGu--UUGUCG----CGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 215158 0.73 0.893054
Target:  5'- --uACAGCuuAACGGUGCCGgaCCGUGCa -3'
miRNA:   3'- guuUGUUGu-UUGUCGCGGC--GGCACGg -5'
1737 3' -51.5 NC_001347.2 + 214699 0.66 0.996362
Target:  5'- -cGGCGGCGAACAGCaGCaucgcgaCGCCccagcUGCCg -3'
miRNA:   3'- guUUGUUGUUUGUCG-CG-------GCGGc----ACGG- -5'
1737 3' -51.5 NC_001347.2 + 210491 0.66 0.99506
Target:  5'- aAAGCGGCGgucgguccaggucAACGGCGUuuCGCCGcGUCa -3'
miRNA:   3'- gUUUGUUGU-------------UUGUCGCG--GCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 210133 0.73 0.893054
Target:  5'- aGAGCGuu--AUAGCGCCGUcuuuCGUGCCg -3'
miRNA:   3'- gUUUGUuguuUGUCGCGGCG----GCACGG- -5'
1737 3' -51.5 NC_001347.2 + 208804 0.7 0.957718
Target:  5'- gAAACGAgAGGCucagccgcugcgccGCGCCGCCGUccucgaagcGCCa -3'
miRNA:   3'- gUUUGUUgUUUGu-------------CGCGGCGGCA---------CGG- -5'
1737 3' -51.5 NC_001347.2 + 208424 0.66 0.997411
Target:  5'- gUAGAU----GAUAGCGCCGCCuagcGCCg -3'
miRNA:   3'- -GUUUGuuguUUGUCGCGGCGGca--CGG- -5'
1737 3' -51.5 NC_001347.2 + 203890 0.78 0.649921
Target:  5'- cCAAGgGACGAGCAGcCGCCG-CGUGCg -3'
miRNA:   3'- -GUUUgUUGUUUGUC-GCGGCgGCACGg -5'
1737 3' -51.5 NC_001347.2 + 203389 0.69 0.969769
Target:  5'- --uACAuccaGAACAGCGCCGa-GUGCUg -3'
miRNA:   3'- guuUGUug--UUUGUCGCGGCggCACGG- -5'
1737 3' -51.5 NC_001347.2 + 199780 0.7 0.956202
Target:  5'- -uGGCGGCGc-CGGUGCCGCCG-GUCu -3'
miRNA:   3'- guUUGUUGUuuGUCGCGGCGGCaCGG- -5'
1737 3' -51.5 NC_001347.2 + 199674 0.67 0.992525
Target:  5'- uUAGGCGACuuGCcggccuugGGUGUCGCCGgcgaGCCc -3'
miRNA:   3'- -GUUUGUUGuuUG--------UCGCGGCGGCa---CGG- -5'
1737 3' -51.5 NC_001347.2 + 198563 0.66 0.995133
Target:  5'- aAAAaguCAAACAaCGCCGgCGUGCUc -3'
miRNA:   3'- gUUUguuGUUUGUcGCGGCgGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 197849 0.66 0.996419
Target:  5'- -cGGCAACGugccauCAGCGCUGU--UGCCg -3'
miRNA:   3'- guUUGUUGUuu----GUCGCGGCGgcACGG- -5'
1737 3' -51.5 NC_001347.2 + 197564 0.7 0.966703
Target:  5'- -uGGCGGCcGACGGCaGCgUGCUGUGCUa -3'
miRNA:   3'- guUUGUUGuUUGUCG-CG-GCGGCACGG- -5'
1737 3' -51.5 NC_001347.2 + 197132 0.66 0.997411
Target:  5'- gGAACu-CGGGCc-CGCCGUCGUcGCCg -3'
miRNA:   3'- gUUUGuuGUUUGucGCGGCGGCA-CGG- -5'
1737 3' -51.5 NC_001347.2 + 197092 0.67 0.992525
Target:  5'- uGAGCAACcacgccAACcGCuGCCGCCGcaagGCCc -3'
miRNA:   3'- gUUUGUUGu-----UUGuCG-CGGCGGCa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.