miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1737 5' -52.5 NC_001347.2 + 183354 0.66 0.996803
Target:  5'- cGGuCGGUuACGACGuUGUGUUacGUCGg -3'
miRNA:   3'- uCCuGCCAcUGCUGC-AUACAGa-CAGC- -5'
1737 5' -52.5 NC_001347.2 + 172120 0.66 0.996266
Target:  5'- cGGugGGUcccGACGACGagGUGgcgcaUCUGUgGg -3'
miRNA:   3'- uCCugCCA---CUGCUGCa-UAC-----AGACAgC- -5'
1737 5' -52.5 NC_001347.2 + 152327 0.67 0.99237
Target:  5'- gGGGACGGUGAUGAUGc-UG-CUGa-- -3'
miRNA:   3'- -UCCUGCCACUGCUGCauACaGACagc -5'
1737 5' -52.5 NC_001347.2 + 2304 0.67 0.992059
Target:  5'- uGGACGGgcacguguacccgcUGGCGGCGgag--CUGUCGc -3'
miRNA:   3'- uCCUGCC--------------ACUGCUGCauacaGACAGC- -5'
1737 5' -52.5 NC_001347.2 + 180903 0.68 0.987351
Target:  5'- --cGCGGUGACGugGagaGcCUGUCGg -3'
miRNA:   3'- uccUGCCACUGCugCauaCaGACAGC- -5'
1737 5' -52.5 NC_001347.2 + 58138 0.69 0.963997
Target:  5'- gAGGAgCGG-GAgGACacUGUGUCUGUCa -3'
miRNA:   3'- -UCCU-GCCaCUgCUGc-AUACAGACAGc -5'
1737 5' -52.5 NC_001347.2 + 172314 0.7 0.960618
Target:  5'- gAGGAgGGcaaGGCGACGcaGUGUCUGUUc -3'
miRNA:   3'- -UCCUgCCa--CUGCUGCa-UACAGACAGc -5'
1737 5' -52.5 NC_001347.2 + 7838 0.7 0.957026
Target:  5'- uGGuACGGUGGCGGCGga---CUGUCa -3'
miRNA:   3'- uCC-UGCCACUGCUGCauacaGACAGc -5'
1737 5' -52.5 NC_001347.2 + 62 0.7 0.954766
Target:  5'- cGGGugGGUGugugccgggugugucGCgGGCGUGUGUUgggugUGUCGg -3'
miRNA:   3'- -UCCugCCAC---------------UG-CUGCAUACAG-----ACAGC- -5'
1737 5' -52.5 NC_001347.2 + 229541 0.7 0.954766
Target:  5'- cGGGugGGUGugugccgggugugucGCgGGCGUGUGUUgggugUGUCGg -3'
miRNA:   3'- -UCCugCCAC---------------UG-CUGCAUACAG-----ACAGC- -5'
1737 5' -52.5 NC_001347.2 + 229682 0.71 0.935738
Target:  5'- cGGGGugUGGUGGCGGgGUGUGUCgg-CGg -3'
miRNA:   3'- -UCCU--GCCACUGCUgCAUACAGacaGC- -5'
1737 5' -52.5 NC_001347.2 + 203 0.71 0.935738
Target:  5'- cGGGGugUGGUGGCGGgGUGUGUCgg-CGg -3'
miRNA:   3'- -UCCU--GCCACUGCUgCAUACAGacaGC- -5'
1737 5' -52.5 NC_001347.2 + 37167 0.75 0.767516
Target:  5'- uGGGCGGUGGCGGCcuuggcgGUcggGUCUGUCu -3'
miRNA:   3'- uCCUGCCACUGCUG-------CAua-CAGACAGc -5'
1737 5' -52.5 NC_001347.2 + 71105 1.09 0.011164
Target:  5'- gAGGACGGUGACGACGUAUGUCUGUCGu -3'
miRNA:   3'- -UCCUGCCACUGCUGCAUACAGACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.