Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1737 | 5' | -52.5 | NC_001347.2 | + | 183354 | 0.66 | 0.996803 |
Target: 5'- cGGuCGGUuACGACGuUGUGUUacGUCGg -3' miRNA: 3'- uCCuGCCAcUGCUGC-AUACAGa-CAGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 172120 | 0.66 | 0.996266 |
Target: 5'- cGGugGGUcccGACGACGagGUGgcgcaUCUGUgGg -3' miRNA: 3'- uCCugCCA---CUGCUGCa-UAC-----AGACAgC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 2304 | 0.67 | 0.992059 |
Target: 5'- uGGACGGgcacguguacccgcUGGCGGCGgag--CUGUCGc -3' miRNA: 3'- uCCUGCC--------------ACUGCUGCauacaGACAGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 152327 | 0.67 | 0.99237 |
Target: 5'- gGGGACGGUGAUGAUGc-UG-CUGa-- -3' miRNA: 3'- -UCCUGCCACUGCUGCauACaGACagc -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 180903 | 0.68 | 0.987351 |
Target: 5'- --cGCGGUGACGugGagaGcCUGUCGg -3' miRNA: 3'- uccUGCCACUGCugCauaCaGACAGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 58138 | 0.69 | 0.963997 |
Target: 5'- gAGGAgCGG-GAgGACacUGUGUCUGUCa -3' miRNA: 3'- -UCCU-GCCaCUgCUGc-AUACAGACAGc -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 229541 | 0.7 | 0.954766 |
Target: 5'- cGGGugGGUGugugccgggugugucGCgGGCGUGUGUUgggugUGUCGg -3' miRNA: 3'- -UCCugCCAC---------------UG-CUGCAUACAG-----ACAGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 62 | 0.7 | 0.954766 |
Target: 5'- cGGGugGGUGugugccgggugugucGCgGGCGUGUGUUgggugUGUCGg -3' miRNA: 3'- -UCCugCCAC---------------UG-CUGCAUACAG-----ACAGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 172314 | 0.7 | 0.960618 |
Target: 5'- gAGGAgGGcaaGGCGACGcaGUGUCUGUUc -3' miRNA: 3'- -UCCUgCCa--CUGCUGCa-UACAGACAGc -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 7838 | 0.7 | 0.957026 |
Target: 5'- uGGuACGGUGGCGGCGga---CUGUCa -3' miRNA: 3'- uCC-UGCCACUGCUGCauacaGACAGc -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 229682 | 0.71 | 0.935738 |
Target: 5'- cGGGGugUGGUGGCGGgGUGUGUCgg-CGg -3' miRNA: 3'- -UCCU--GCCACUGCUgCAUACAGacaGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 203 | 0.71 | 0.935738 |
Target: 5'- cGGGGugUGGUGGCGGgGUGUGUCgg-CGg -3' miRNA: 3'- -UCCU--GCCACUGCUgCAUACAGacaGC- -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 37167 | 0.75 | 0.767516 |
Target: 5'- uGGGCGGUGGCGGCcuuggcgGUcggGUCUGUCu -3' miRNA: 3'- uCCUGCCACUGCUG-------CAua-CAGACAGc -5' |
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1737 | 5' | -52.5 | NC_001347.2 | + | 71105 | 1.09 | 0.011164 |
Target: 5'- gAGGACGGUGACGACGUAUGUCUGUCGu -3' miRNA: 3'- -UCCUGCCACUGCUGCAUACAGACAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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