miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17370 3' -49.4 NC_004367.1 + 134863 0.66 0.998054
Target:  5'- gCGUUgGuUGUUGGCgGGAUgCUAAAGCUg -3'
miRNA:   3'- -GUAAgC-ACAAUCG-UCUGgGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 62933 0.66 0.997225
Target:  5'- gGUUCGUGg-GGCAGuACCUUuu-GCCu -3'
miRNA:   3'- gUAAGCACaaUCGUC-UGGGGuuuCGG- -5'
17370 3' -49.4 NC_004367.1 + 44775 0.66 0.996544
Target:  5'- --aUCGUGgauGUAGAauCCCCAGguggcgaugagaacGGCCa -3'
miRNA:   3'- guaAGCACaauCGUCU--GGGGUU--------------UCGG- -5'
17370 3' -49.4 NC_004367.1 + 31826 0.67 0.99606
Target:  5'- ---gCGUGUUuucaUAGACCCCcguccagAAAGCCa -3'
miRNA:   3'- guaaGCACAAuc--GUCUGGGG-------UUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 23520 0.67 0.99545
Target:  5'- uCAUUCGgggGggGGCcgcGACCuggaaccuguCCAGGGCCg -3'
miRNA:   3'- -GUAAGCa--CaaUCGu--CUGG----------GGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 56882 0.67 0.99545
Target:  5'- uCAUUCGgggGggGGCcgcGACCuggaaccugaCCAGGGCCg -3'
miRNA:   3'- -GUAAGCa--CaaUCGu--CUGG----------GGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 116577 0.67 0.99545
Target:  5'- uCAUUCGgggGggGGCcgcGACCuggaaccugaCCAGGGCCg -3'
miRNA:   3'- -GUAAGCa--CaaUCGu--CUGG----------GGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 21868 0.7 0.972147
Target:  5'- ---gCG-GgaGGCAGGCUCCGGAGCUu -3'
miRNA:   3'- guaaGCaCaaUCGUCUGGGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 35219 0.7 0.972147
Target:  5'- uGUUCGUG-UAGUuuuuGACCUgAAAGUCg -3'
miRNA:   3'- gUAAGCACaAUCGu---CUGGGgUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 78513 0.7 0.969118
Target:  5'- -uUUUGUGUUAGCuGACUgUGGAGCa -3'
miRNA:   3'- guAAGCACAAUCGuCUGGgGUUUCGg -5'
17370 3' -49.4 NC_004367.1 + 123747 0.72 0.919616
Target:  5'- -cUUCG-GUUGGacccaacugAGACCCCGAGGCUa -3'
miRNA:   3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 120837 0.72 0.913558
Target:  5'- -cUUCGgGUUGGacccaacugAGACCCCGAGGCUa -3'
miRNA:   3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 126656 0.72 0.913558
Target:  5'- -cUUCGgGUUGGacccaacugAGACCCCGAGGCUa -3'
miRNA:   3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 129565 0.72 0.913558
Target:  5'- -cUUCGgGUUGGacccaacugAGACCCCGAGGCUa -3'
miRNA:   3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 109909 0.72 0.907238
Target:  5'- uUAUUCGgaagaugGGCAGACCUUGGAGCUg -3'
miRNA:   3'- -GUAAGCacaa---UCGUCUGGGGUUUCGG- -5'
17370 3' -49.4 NC_004367.1 + 104164 1.13 0.006829
Target:  5'- cCAUUCGUGUUAGCAGACCCCAAAGCCu -3'
miRNA:   3'- -GUAAGCACAAUCGUCUGGGGUUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.