Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17370 | 3' | -49.4 | NC_004367.1 | + | 134863 | 0.66 | 0.998054 |
Target: 5'- gCGUUgGuUGUUGGCgGGAUgCUAAAGCUg -3' miRNA: 3'- -GUAAgC-ACAAUCG-UCUGgGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 62933 | 0.66 | 0.997225 |
Target: 5'- gGUUCGUGg-GGCAGuACCUUuu-GCCu -3' miRNA: 3'- gUAAGCACaaUCGUC-UGGGGuuuCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 44775 | 0.66 | 0.996544 |
Target: 5'- --aUCGUGgauGUAGAauCCCCAGguggcgaugagaacGGCCa -3' miRNA: 3'- guaAGCACaauCGUCU--GGGGUU--------------UCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 31826 | 0.67 | 0.99606 |
Target: 5'- ---gCGUGUUuucaUAGACCCCcguccagAAAGCCa -3' miRNA: 3'- guaaGCACAAuc--GUCUGGGG-------UUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 23520 | 0.67 | 0.99545 |
Target: 5'- uCAUUCGgggGggGGCcgcGACCuggaaccuguCCAGGGCCg -3' miRNA: 3'- -GUAAGCa--CaaUCGu--CUGG----------GGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 56882 | 0.67 | 0.99545 |
Target: 5'- uCAUUCGgggGggGGCcgcGACCuggaaccugaCCAGGGCCg -3' miRNA: 3'- -GUAAGCa--CaaUCGu--CUGG----------GGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 116577 | 0.67 | 0.99545 |
Target: 5'- uCAUUCGgggGggGGCcgcGACCuggaaccugaCCAGGGCCg -3' miRNA: 3'- -GUAAGCa--CaaUCGu--CUGG----------GGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 21868 | 0.7 | 0.972147 |
Target: 5'- ---gCG-GgaGGCAGGCUCCGGAGCUu -3' miRNA: 3'- guaaGCaCaaUCGUCUGGGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 35219 | 0.7 | 0.972147 |
Target: 5'- uGUUCGUG-UAGUuuuuGACCUgAAAGUCg -3' miRNA: 3'- gUAAGCACaAUCGu---CUGGGgUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 78513 | 0.7 | 0.969118 |
Target: 5'- -uUUUGUGUUAGCuGACUgUGGAGCa -3' miRNA: 3'- guAAGCACAAUCGuCUGGgGUUUCGg -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 123747 | 0.72 | 0.919616 |
Target: 5'- -cUUCG-GUUGGacccaacugAGACCCCGAGGCUa -3' miRNA: 3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 120837 | 0.72 | 0.913558 |
Target: 5'- -cUUCGgGUUGGacccaacugAGACCCCGAGGCUa -3' miRNA: 3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 126656 | 0.72 | 0.913558 |
Target: 5'- -cUUCGgGUUGGacccaacugAGACCCCGAGGCUa -3' miRNA: 3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 129565 | 0.72 | 0.913558 |
Target: 5'- -cUUCGgGUUGGacccaacugAGACCCCGAGGCUa -3' miRNA: 3'- guAAGCaCAAUCg--------UCUGGGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 109909 | 0.72 | 0.907238 |
Target: 5'- uUAUUCGgaagaugGGCAGACCUUGGAGCUg -3' miRNA: 3'- -GUAAGCacaa---UCGUCUGGGGUUUCGG- -5' |
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17370 | 3' | -49.4 | NC_004367.1 | + | 104164 | 1.13 | 0.006829 |
Target: 5'- cCAUUCGUGUUAGCAGACCCCAAAGCCu -3' miRNA: 3'- -GUAAGCACAAUCGUCUGGGGUUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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