miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17371 3' -62.8 NC_004367.1 + 56869 0.68 0.400529
Target:  5'- cGGGCCuggagCCCCACGCcggGCCUggagCCCCACg- -3'
miRNA:   3'- -UUCGG-----GGGGUGUG---UGGGa---GGGGUGau -5'
17371 3' -62.8 NC_004367.1 + 142163 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 142491 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 144129 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 144457 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 144784 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 145112 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 145440 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 145767 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 146095 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 143474 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 143146 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 142818 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 147406 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 147733 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 148061 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 148389 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 148716 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 149044 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 149372 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.