miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17371 3' -62.8 NC_004367.1 + 140582 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 94072 0.66 0.546597
Target:  5'- uAGCCUaUCAUACA-CCUCCCCGCg- -3'
miRNA:   3'- uUCGGGgGGUGUGUgGGAGGGGUGau -5'
17371 3' -62.8 NC_004367.1 + 142220 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 140909 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 141237 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 141565 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 141892 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 142875 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 143858 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 142548 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 149101 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 122888 0.66 0.527191
Target:  5'- gGGGCCCUCCcaGCACagGCCCaauuccuguuUCCCaCGCUAa -3'
miRNA:   3'- -UUCGGGGGG--UGUG--UGGG----------AGGG-GUGAU- -5'
17371 3' -62.8 NC_004367.1 + 125797 0.66 0.527191
Target:  5'- gGGGCCCUCCcaGCACagGCCCaauuccuguuUCCCaCGCUAa -3'
miRNA:   3'- -UUCGGGGGG--UGUG--UGGG----------AGGG-GUGAU- -5'
17371 3' -62.8 NC_004367.1 + 131455 0.67 0.49295
Target:  5'- uAGCCCCCaCACggGCucguaacaaaagaauGCCCcgCCCCACUc -3'
miRNA:   3'- uUCGGGGG-GUG--UG---------------UGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 29076 0.67 0.465216
Target:  5'- -cGCCCCCCAucaucCACACCCguuguuaucauauaaUUCCCuCUAg -3'
miRNA:   3'- uuCGGGGGGU-----GUGUGGG---------------AGGGGuGAU- -5'
17371 3' -62.8 NC_004367.1 + 145440 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 141180 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 140852 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 146095 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 145767 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.