miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17371 5' -49.6 NC_004367.1 + 119241 0.66 0.996709
Target:  5'- uGACAGGGGGG--GGACuCCA--GUCAGa -3'
miRNA:   3'- -UUGUUCUCCUuaUCUG-GGUucCAGUC- -5'
17371 5' -49.6 NC_004367.1 + 144719 0.66 0.996709
Target:  5'- cGCGAGAGGAAccgugggcgcgGGACCCcuGGagCGGg -3'
miRNA:   3'- uUGUUCUCCUUa----------UCUGGGuuCCa-GUC- -5'
17371 5' -49.6 NC_004367.1 + 55573 0.66 0.995917
Target:  5'- ----uGAGGggUGGcucuaauuauggguGCCCGuGGUCAGa -3'
miRNA:   3'- uuguuCUCCuuAUC--------------UGGGUuCCAGUC- -5'
17371 5' -49.6 NC_004367.1 + 35708 0.68 0.985609
Target:  5'- gGGCAGGcacGGGAAcgucacagcccuuUAGACCUAGGG-CAGa -3'
miRNA:   3'- -UUGUUC---UCCUU-------------AUCUGGGUUCCaGUC- -5'
17371 5' -49.6 NC_004367.1 + 120469 0.68 0.977165
Target:  5'- ----uGGGGAGacUAGGCCCAAGGUgGa -3'
miRNA:   3'- uuguuCUCCUU--AUCUGGGUUCCAgUc -5'
17371 5' -49.6 NC_004367.1 + 123378 0.68 0.977165
Target:  5'- ----uGGGGAGacUAGGCCCAAGGUgGa -3'
miRNA:   3'- uuguuCUCCUU--AUCUGGGUUCCAgUc -5'
17371 5' -49.6 NC_004367.1 + 126287 0.68 0.977165
Target:  5'- ----uGGGGAGacUAGGCCCAAGGUgGa -3'
miRNA:   3'- uuguuCUCCUU--AUCUGGGUUCCAgUc -5'
17371 5' -49.6 NC_004367.1 + 129196 0.68 0.977165
Target:  5'- ----uGGGGAGacUAGGCCCAAGGUgGa -3'
miRNA:   3'- uuguuCUCCUU--AUCUGGGUUCCAgUc -5'
17371 5' -49.6 NC_004367.1 + 124146 0.71 0.911615
Target:  5'- aGGCGAGAGGAuagGGACCCGgccaccccuuggGGGUUcuGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCCAG--UC- -5'
17371 5' -49.6 NC_004367.1 + 127055 0.71 0.911615
Target:  5'- aGGCGAGAGGAuagGGACCCGgccaccccuuggGGGUUcuGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCCAG--UC- -5'
17371 5' -49.6 NC_004367.1 + 129964 0.71 0.911615
Target:  5'- aGGCGAGAGGAuagGGACCCGgccaccccuuggGGGUUcuGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCCAG--UC- -5'
17371 5' -49.6 NC_004367.1 + 121237 0.71 0.911615
Target:  5'- aGGCGAGAGGAuagGGACCCGgccaccccuuggGGGUUcuGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCCAG--UC- -5'
17371 5' -49.6 NC_004367.1 + 120924 0.72 0.891414
Target:  5'- aGGCGAGAGGAuagGGACCCGgccgccccuuggGGGuuUCGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCC--AGUC- -5'
17371 5' -49.6 NC_004367.1 + 123833 0.72 0.891414
Target:  5'- aGGCGAGAGGAuagGGACCCGgccgccccuuggGGGuuUCGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCC--AGUC- -5'
17371 5' -49.6 NC_004367.1 + 129652 0.72 0.891414
Target:  5'- aGGCGAGAGGAuagGGACCCGgccgccccuuggGGGuuUCGGg -3'
miRNA:   3'- -UUGUUCUCCUua-UCUGGGU------------UCC--AGUC- -5'
17371 5' -49.6 NC_004367.1 + 13781 0.75 0.789296
Target:  5'- aGAUAAGAGGAggGGGCgucugCGAGGUCAGa -3'
miRNA:   3'- -UUGUUCUCCUuaUCUGg----GUUCCAGUC- -5'
17371 5' -49.6 NC_004367.1 + 108098 1.06 0.014927
Target:  5'- cAACAAGAGGAAUAGACCCAAGGUCAGc -3'
miRNA:   3'- -UUGUUCUCCUUAUCUGGGUUCCAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.