miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17374 3' -51.9 NC_004367.1 + 22381 0.66 0.989321
Target:  5'- cCCGCGGACAucugagcguugcucAGGUCUCu-UUGGCc -3'
miRNA:   3'- -GGCGCCUGUua------------UUCAGGGuuAGCCGc -5'
17374 3' -51.9 NC_004367.1 + 55973 0.66 0.989321
Target:  5'- cCCGCGGACAucugagcguugcucAGGUCUCu-UUGGCc -3'
miRNA:   3'- -GGCGCCUGUua------------UUCAGGGuuAGCCGc -5'
17374 3' -51.9 NC_004367.1 + 115598 0.66 0.989183
Target:  5'- gUCGCGGACAuuu-GUCcgCCGAUUGGg- -3'
miRNA:   3'- -GGCGCCUGUuauuCAG--GGUUAGCCgc -5'
17374 3' -51.9 NC_004367.1 + 31464 0.66 0.989183
Target:  5'- gCaCGGGC-GUGGGaUCCCAGcCGGCGu -3'
miRNA:   3'- gGcGCCUGuUAUUC-AGGGUUaGCCGC- -5'
17374 3' -51.9 NC_004367.1 + 26005 0.66 0.989183
Target:  5'- -gGCuGGACAuuGUAAgGUCCgGGUUGGCu -3'
miRNA:   3'- ggCG-CCUGU--UAUU-CAGGgUUAGCCGc -5'
17374 3' -51.9 NC_004367.1 + 9780 0.66 0.987729
Target:  5'- aCGUGGGgcCAAUccGUCCaucuUCGGCGu -3'
miRNA:   3'- gGCGCCU--GUUAuuCAGGguu-AGCCGC- -5'
17374 3' -51.9 NC_004367.1 + 62110 0.66 0.987576
Target:  5'- aUGCGGAUAuacauccagggacAUAAGUCUgGuUCGGCc -3'
miRNA:   3'- gGCGCCUGU-------------UAUUCAGGgUuAGCCGc -5'
17374 3' -51.9 NC_004367.1 + 19448 0.66 0.986129
Target:  5'- cCCGUGGACucucuGUCaCCA-UgGGCGa -3'
miRNA:   3'- -GGCGCCUGuuauuCAG-GGUuAgCCGC- -5'
17374 3' -51.9 NC_004367.1 + 57930 0.67 0.980361
Target:  5'- aUGUGGAaugugAAUAGGUUCCAaauguGUCGGCc -3'
miRNA:   3'- gGCGCCUg----UUAUUCAGGGU-----UAGCCGc -5'
17374 3' -51.9 NC_004367.1 + 69507 0.67 0.975627
Target:  5'- uCUGCGGuuUAGUAGGgcuguaagCCCu-UCGGCGg -3'
miRNA:   3'- -GGCGCCu-GUUAUUCa-------GGGuuAGCCGC- -5'
17374 3' -51.9 NC_004367.1 + 51362 0.68 0.965092
Target:  5'- gCCGUGGAUcuggcuauuguuuuAUGGGUCCCGGUCcuuauGCGa -3'
miRNA:   3'- -GGCGCCUGu-------------UAUUCAGGGUUAGc----CGC- -5'
17374 3' -51.9 NC_004367.1 + 55881 0.69 0.943879
Target:  5'- uCCGCGGGCGGggacguGUCCCc--CGGUu -3'
miRNA:   3'- -GGCGCCUGUUauu---CAGGGuuaGCCGc -5'
17374 3' -51.9 NC_004367.1 + 96426 0.69 0.941094
Target:  5'- aCGCGGACugccuaucuacucUAGG-CCCAAcCGGCGu -3'
miRNA:   3'- gGCGCCUGuu-----------AUUCaGGGUUaGCCGC- -5'
17374 3' -51.9 NC_004367.1 + 18330 0.69 0.939189
Target:  5'- uUGUGGAUggUAAGUCCgGAUgGGa- -3'
miRNA:   3'- gGCGCCUGuuAUUCAGGgUUAgCCgc -5'
17374 3' -51.9 NC_004367.1 + 115731 0.72 0.863955
Target:  5'- cUCGCGGACAAcu-GUCCCcGUCucGCGg -3'
miRNA:   3'- -GGCGCCUGUUauuCAGGGuUAGc-CGC- -5'
17374 3' -51.9 NC_004367.1 + 128402 0.72 0.831628
Target:  5'- aUCGCGG-CuGUAAGUCCCA---GGCGa -3'
miRNA:   3'- -GGCGCCuGuUAUUCAGGGUuagCCGC- -5'
17374 3' -51.9 NC_004367.1 + 125493 0.72 0.831628
Target:  5'- aUCGCGG-CuGUAAGUCCCA---GGCGa -3'
miRNA:   3'- -GGCGCCuGuUAUUCAGGGUuagCCGC- -5'
17374 3' -51.9 NC_004367.1 + 122584 0.72 0.831628
Target:  5'- aUCGCGG-CuGUAAGUCCCA---GGCGa -3'
miRNA:   3'- -GGCGCCuGuUAUUCAGGGUuagCCGC- -5'
17374 3' -51.9 NC_004367.1 + 137590 0.75 0.708836
Target:  5'- uUGCGGGCAAaGAGUCUCAAUacagcCGGCu -3'
miRNA:   3'- gGCGCCUGUUaUUCAGGGUUA-----GCCGc -5'
17374 3' -51.9 NC_004367.1 + 115689 0.75 0.678122
Target:  5'- cCCGCGGACAAcu-GUCCCcGUCucGCGg -3'
miRNA:   3'- -GGCGCCUGUUauuCAGGGuUAGc-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.