miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17375 3' -54.6 NC_004367.1 + 143726 0.66 0.918056
Target:  5'- ---aCCGGUGGGcgcgGGAcCCUGgagcggGGGUg -3'
miRNA:   3'- auugGGCCACCCa---CCUuGGAUa-----UCCA- -5'
17375 3' -54.6 NC_004367.1 + 121207 0.67 0.894175
Target:  5'- gGACCCGGUuaggccgggauaaugGGGgagguccgaaugGGggUCUGUGGGc -3'
miRNA:   3'- aUUGGGCCA---------------CCCa-----------CCuuGGAUAUCCa -5'
17375 3' -54.6 NC_004367.1 + 124116 0.67 0.894175
Target:  5'- gGACCCGGUuaggccgggauaaugGGGgagguccgaaugGGggUCUGUGGGc -3'
miRNA:   3'- aUUGGGCCA---------------CCCa-----------CCuuGGAUAUCCa -5'
17375 3' -54.6 NC_004367.1 + 127025 0.67 0.894175
Target:  5'- gGACCCGGUuaggccgggauaaugGGGgagguccgaaugGGggUCUGUGGGc -3'
miRNA:   3'- aUUGGGCCA---------------CCCa-----------CCuuGGAUAUCCa -5'
17375 3' -54.6 NC_004367.1 + 129934 0.67 0.894175
Target:  5'- gGACCCGGUuaggccgggauaaugGGGgagguccgaaugGGggUCUGUGGGc -3'
miRNA:   3'- aUUGGGCCA---------------CCCa-----------CCuuGGAUAUCCa -5'
17375 3' -54.6 NC_004367.1 + 23068 0.68 0.871392
Target:  5'- gUAACCCuGUGGGUcacAACCUAcAGGUa -3'
miRNA:   3'- -AUUGGGcCACCCAcc-UUGGAUaUCCA- -5'
17375 3' -54.6 NC_004367.1 + 116125 0.68 0.871392
Target:  5'- gUAACCCuGUGGGUcacAACCUAcAGGUa -3'
miRNA:   3'- -AUUGGGcCACCCAcc-UUGGAUaUCCA- -5'
17375 3' -54.6 NC_004367.1 + 56430 0.68 0.839729
Target:  5'- gUAACCCaGUGGGUcacAACCUAcAGGUa -3'
miRNA:   3'- -AUUGGGcCACCCAcc-UUGGAUaUCCA- -5'
17375 3' -54.6 NC_004367.1 + 56213 0.71 0.711952
Target:  5'- gUGACCUacauuugggaaggggGGgguuagGGGgGGAACCUAUAGGUa -3'
miRNA:   3'- -AUUGGG---------------CCa-----CCCaCCUUGGAUAUCCA- -5'
17375 3' -54.6 NC_004367.1 + 103473 0.71 0.687352
Target:  5'- cAGCCUGGUGGGUGGAuuuaGCCa------ -3'
miRNA:   3'- aUUGGGCCACCCACCU----UGGauaucca -5'
17375 3' -54.6 NC_004367.1 + 56493 0.8 0.26385
Target:  5'- uUAACCUauaGGGUGGGACCUAUAGGUa -3'
miRNA:   3'- -AUUGGGccaCCCACCUUGGAUAUCCA- -5'
17375 3' -54.6 NC_004367.1 + 23131 0.84 0.155314
Target:  5'- uUAACCUGuaGGGUGGGACCUAUAGGUa -3'
miRNA:   3'- -AUUGGGCcaCCCACCUUGGAUAUCCA- -5'
17375 3' -54.6 NC_004367.1 + 116188 0.84 0.155314
Target:  5'- uUAACCUGuaGGGUGGGACCUAUAGGUa -3'
miRNA:   3'- -AUUGGGCcaCCCACCUUGGAUAUCCA- -5'
17375 3' -54.6 NC_004367.1 + 22872 1.06 0.005131
Target:  5'- uUAACCCGGUGGGUGGAACCUAUAGGUa -3'
miRNA:   3'- -AUUGGGCCACCCACCUUGGAUAUCCA- -5'
17375 3' -54.6 NC_004367.1 + 115928 1.06 0.005131
Target:  5'- uUAACCCGGUGGGUGGAACCUAUAGGUa -3'
miRNA:   3'- -AUUGGGCCACCCACCUUGGAUAUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.