miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17375 5' -60.3 NC_004367.1 + 2651 0.68 0.563169
Target:  5'- cGACCCCAaccucGACCCCaaccucgaCCCCaaCCAUUGAAa -3'
miRNA:   3'- cUUGGGGU-----UUGGGG--------GGGG--GGUGACUU- -5'
17375 5' -60.3 NC_004367.1 + 22585 0.69 0.476349
Target:  5'- -cGCCCCAucCCCCaCUCUCCAUUGGc -3'
miRNA:   3'- cuUGGGGUuuGGGG-GGGGGGUGACUu -5'
17375 5' -60.3 NC_004367.1 + 22794 0.69 0.504632
Target:  5'- -cACCCCAucCCCCaCUCUCCAUUGGc -3'
miRNA:   3'- cuUGGGGUuuGGGG-GGGGGGUGACUu -5'
17375 5' -60.3 NC_004367.1 + 22907 1.05 0.001818
Target:  5'- gGAACCCCAAACCCCCCCCCCACUGAAu -3'
miRNA:   3'- -CUUGGGGUUUGGGGGGGGGGUGACUU- -5'
17375 5' -60.3 NC_004367.1 + 56156 0.69 0.476349
Target:  5'- -cGCCCCAucCCCCaCUCUCCAUUGGc -3'
miRNA:   3'- cuUGGGGUuuGGGG-GGGGGGUGACUu -5'
17375 5' -60.3 NC_004367.1 + 56268 1.05 0.001818
Target:  5'- gGAACCCCAAACCCCCCCCCCACUGAAu -3'
miRNA:   3'- -CUUGGGGUUUGGGGGGGGGGUGACUU- -5'
17375 5' -60.3 NC_004367.1 + 56364 0.69 0.504632
Target:  5'- -cACCCCAucCCCCaCUCUCCAUUGGc -3'
miRNA:   3'- cuUGGGGUuuGGGG-GGGGGGUGACUu -5'
17375 5' -60.3 NC_004367.1 + 77076 0.66 0.673759
Target:  5'- -cACCCCAggUCCCCgUCCagggcgcuCACUGAc -3'
miRNA:   3'- cuUGGGGUuuGGGGGgGGG--------GUGACUu -5'
17375 5' -60.3 NC_004367.1 + 91802 0.67 0.593143
Target:  5'- --uUCCCGAACCCCCUCCagucuCUGAc -3'
miRNA:   3'- cuuGGGGUUUGGGGGGGGggu--GACUu -5'
17375 5' -60.3 NC_004367.1 + 104654 0.67 0.633461
Target:  5'- uAACCCCAgaaucucuggccGACCCUCCaCCCUACg--- -3'
miRNA:   3'- cUUGGGGU------------UUGGGGGG-GGGGUGacuu -5'
17375 5' -60.3 NC_004367.1 + 108065 0.68 0.563169
Target:  5'- aAGCCCCccACacaCCCUCCCCACUaGGGg -3'
miRNA:   3'- cUUGGGGuuUGg--GGGGGGGGUGA-CUU- -5'
17375 5' -60.3 NC_004367.1 + 115850 0.69 0.504632
Target:  5'- -cACCCCAucCCCCaCUCUCCAUUGGc -3'
miRNA:   3'- cuUGGGGUuuGGGG-GGGGGGUGACUu -5'
17375 5' -60.3 NC_004367.1 + 115963 1.05 0.001818
Target:  5'- gGAACCCCAAACCCCCCCCCCACUGAAu -3'
miRNA:   3'- -CUUGGGGUUUGGGGGGGGGGUGACUU- -5'
17375 5' -60.3 NC_004367.1 + 121409 0.7 0.457937
Target:  5'- cAGCCCaCAGACCCCCauucggaccuCCCCCAUUa-- -3'
miRNA:   3'- cUUGGG-GUUUGGGGG----------GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 124318 0.7 0.457937
Target:  5'- cAGCCCaCAGACCCCCauucggaccuCCCCCAUUa-- -3'
miRNA:   3'- cUUGGG-GUUUGGGGG----------GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 127227 0.7 0.457937
Target:  5'- cAGCCCaCAGACCCCCauucggaccuCCCCCAUUa-- -3'
miRNA:   3'- cUUGGG-GUUUGGGGG----------GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 130136 0.7 0.457937
Target:  5'- cAGCCCaCAGACCCCCauucggaccuCCCCCAUUa-- -3'
miRNA:   3'- cUUGGG-GUUUGGGGG----------GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 140379 0.66 0.713524
Target:  5'- -cACCggggCAAgggcACCCCCCCCCCACc--- -3'
miRNA:   3'- cuUGGg---GUU----UGGGGGGGGGGUGacuu -5'
17375 5' -60.3 NC_004367.1 + 140416 0.68 0.532639
Target:  5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3'
miRNA:   3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5'
17375 5' -60.3 NC_004367.1 + 140582 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.