Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17375 | 5' | -60.3 | NC_004367.1 | + | 142054 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141726 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141565 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141237 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140379 | 0.66 | 0.713524 |
Target: 5'- -cACCggggCAAgggcACCCCCCCCCCACc--- -3' miRNA: 3'- cuUGGg---GUU----UGGGGGGGGGGUGacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 143203 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141892 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140909 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 142875 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140582 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 142220 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 142548 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141399 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141071 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140743 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140416 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 143693 | 0.69 | 0.514221 |
Target: 5'- -uACCCCAAGCCCCCCCggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 115963 | 1.05 | 0.001818 |
Target: 5'- gGAACCCCAAACCCCCCCCCCACUGAAu -3' miRNA: 3'- -CUUGGGGUUUGGGGGGGGGGUGACUU- -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 56268 | 1.05 | 0.001818 |
Target: 5'- gGAACCCCAAACCCCCCCCCCACUGAAu -3' miRNA: 3'- -CUUGGGGUUUGGGGGGGGGGUGACUU- -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 22907 | 1.05 | 0.001818 |
Target: 5'- gGAACCCCAAACCCCCCCCCCACUGAAu -3' miRNA: 3'- -CUUGGGGUUUGGGGGGGGGGUGACUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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