miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17376 3' -46.4 NC_004367.1 + 16479 0.67 0.999694
Target:  5'- cACCgcuuAUGCAGUUuCUUCaUAGGAUUAa -3'
miRNA:   3'- -UGGau--UACGUUAAuGGAG-GUCCUAAU- -5'
17376 3' -46.4 NC_004367.1 + 71054 0.67 0.999506
Target:  5'- cGCCUGAUGUuguGUUGCCUCUAu----- -3'
miRNA:   3'- -UGGAUUACGu--UAAUGGAGGUccuaau -5'
17376 3' -46.4 NC_004367.1 + 86494 0.67 0.999506
Target:  5'- uUCUGGUGUugcaccacACCUCCGGGGUa- -3'
miRNA:   3'- uGGAUUACGuuaa----UGGAGGUCCUAau -5'
17376 3' -46.4 NC_004367.1 + 120706 0.67 0.999379
Target:  5'- uGCUaggUGGUGCAGUgGCCaCCAGGAg-- -3'
miRNA:   3'- -UGG---AUUACGUUAaUGGaGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 123615 0.67 0.999379
Target:  5'- uGCUaggUGGUGCAGUgGCCaCCAGGAg-- -3'
miRNA:   3'- -UGG---AUUACGUUAaUGGaGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 126524 0.67 0.999379
Target:  5'- uGCUaggUGGUGCAGUgGCCaCCAGGAg-- -3'
miRNA:   3'- -UGG---AUUACGUUAaUGGaGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 129433 0.67 0.999379
Target:  5'- uGCUaggUGGUGCAGUgGCCaCCAGGAg-- -3'
miRNA:   3'- -UGG---AUUACGUUAaUGGaGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 44540 0.68 0.998434
Target:  5'- uGCCUug-GCuccucugucacuUUACCUCCAGGAg-- -3'
miRNA:   3'- -UGGAuuaCGuu----------AAUGGAGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 63735 0.69 0.996356
Target:  5'- aGCCUGGUGaGAcUACCUCaCAGGGc-- -3'
miRNA:   3'- -UGGAUUACgUUaAUGGAG-GUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 41628 0.7 0.993064
Target:  5'- uGCCUAAUGCAAauaGCaUUCCAGGuUUAu -3'
miRNA:   3'- -UGGAUUACGUUaa-UG-GAGGUCCuAAU- -5'
17376 3' -46.4 NC_004367.1 + 135598 0.71 0.986004
Target:  5'- uGCCUGccuUGCAGUU-CCUUCAGGGc-- -3'
miRNA:   3'- -UGGAUu--ACGUUAAuGGAGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 91162 0.74 0.938418
Target:  5'- uCCUGucaGCGGUgGCCUCCAGGAa-- -3'
miRNA:   3'- uGGAUua-CGUUAaUGGAGGUCCUaau -5'
17376 3' -46.4 NC_004367.1 + 23032 1.07 0.025308
Target:  5'- cACCUAAUGCAAUUACCUCCAGGAUUAc -3'
miRNA:   3'- -UGGAUUACGUUAAUGGAGGUCCUAAU- -5'
17376 3' -46.4 NC_004367.1 + 56394 1.07 0.025308
Target:  5'- cACCUAAUGCAAUUACCUCCAGGAUUAc -3'
miRNA:   3'- -UGGAUUACGUUAAUGGAGGUCCUAAU- -5'
17376 3' -46.4 NC_004367.1 + 116089 1.07 0.025308
Target:  5'- cACCUAAUGCAAUUACCUCCAGGAUUAc -3'
miRNA:   3'- -UGGAUUACGUUAAUGGAGGUCCUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.