miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17376 5' -51.5 NC_004367.1 + 41447 0.66 0.988268
Target:  5'- -aUGACCCccgccaGGGUCGCAGCCa--- -3'
miRNA:   3'- ucAUUGGGaca---CCCAGUGUUGGaugu -5'
17376 5' -51.5 NC_004367.1 + 73945 0.67 0.978662
Target:  5'- cGUAGCCCcgcgcUGUGGGaaAUAuGCCUAUAa -3'
miRNA:   3'- uCAUUGGG-----ACACCCagUGU-UGGAUGU- -5'
17376 5' -51.5 NC_004367.1 + 41614 0.67 0.970629
Target:  5'- --cGACCCUGgcggGGGUCAUAGuggaaCUAUAg -3'
miRNA:   3'- ucaUUGGGACa---CCCAGUGUUg----GAUGU- -5'
17376 5' -51.5 NC_004367.1 + 45574 0.68 0.96063
Target:  5'- -uUGugCCUGgccaGGGUCACAGCg-GCAa -3'
miRNA:   3'- ucAUugGGACa---CCCAGUGUUGgaUGU- -5'
17376 5' -51.5 NC_004367.1 + 115928 0.69 0.934109
Target:  5'- -uUAACCCgGUGGGUgG-AACCUAUAg -3'
miRNA:   3'- ucAUUGGGaCACCCAgUgUUGGAUGU- -5'
17376 5' -51.5 NC_004367.1 + 22872 0.69 0.934109
Target:  5'- -uUAACCCgGUGGGUgG-AACCUAUAg -3'
miRNA:   3'- ucAUUGGGaCACCCAgUgUUGGAUGU- -5'
17376 5' -51.5 NC_004367.1 + 132290 0.7 0.91741
Target:  5'- --cAGCUUUGUGGGUCGCcauACCUGg- -3'
miRNA:   3'- ucaUUGGGACACCCAGUGu--UGGAUgu -5'
17376 5' -51.5 NC_004367.1 + 26443 0.71 0.857018
Target:  5'- uAGUAGCCCUGgggugggaacccugGGGUCACAuggggACCa--- -3'
miRNA:   3'- -UCAUUGGGACa-------------CCCAGUGU-----UGGaugu -5'
17376 5' -51.5 NC_004367.1 + 45743 0.72 0.82847
Target:  5'- uGUGACCCUGgccaGG-CACAAuCCUACAc -3'
miRNA:   3'- uCAUUGGGACac--CCaGUGUU-GGAUGU- -5'
17376 5' -51.5 NC_004367.1 + 56428 1.01 0.024169
Target:  5'- gAGUAACCCaGUGGGUCACAACCUACAg -3'
miRNA:   3'- -UCAUUGGGaCACCCAGUGUUGGAUGU- -5'
17376 5' -51.5 NC_004367.1 + 116123 1.1 0.006453
Target:  5'- gAGUAACCCUGUGGGUCACAACCUACAg -3'
miRNA:   3'- -UCAUUGGGACACCCAGUGUUGGAUGU- -5'
17376 5' -51.5 NC_004367.1 + 23066 1.1 0.006453
Target:  5'- gAGUAACCCUGUGGGUCACAACCUACAg -3'
miRNA:   3'- -UCAUUGGGACACCCAGUGUUGGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.