miRNA: 3'- aGACuGACCUC---------------AGGGGGGGGACaGUG- -5'
miRNA: 3'- agaCUgACCUCAGGGGG--GGG-ACAGug -5'
miRNA: 3'- -AGACU-------GACCU----CAGGGg--GGGGACAGUg -5'
miRNA: 3'- aGACugAccu--CAGGGGGGGGACAGUG- -5'
miRNA: 3'- -AGACUGACCUCAGGGGGGGGACAGUG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17377 | 3' | -59.7 | NC_004367.1 | + | 105945 | 0.66 | 0.763368 |
|
Target: 5'- cCUG-UUGGAGuuccgugaugucaauUCUCCCCCUUGcCGCa -3' miRNA: 3'- aGACuGACCUC---------------AGGGGGGGGACaGUG- -5' |
|||||||
| 17377 | 3' | -59.7 | NC_004367.1 | + | 69327 | 0.67 | 0.692102 |
|
Target: 5'- --gGAgUGGAGUCCCCCuuCCCaUGUUu- -3' miRNA: 3'- agaCUgACCUCAGGGGG--GGG-ACAGug -5' |
|||||||
| 17377 | 3' | -59.7 | NC_004367.1 | + | 2342 | 0.68 | 0.631215 |
|
Target: 5'- uUCUGAaguauuuCUGGAcgguGUCCCauaCCUCUGUCAg -3' miRNA: 3'- -AGACU-------GACCU----CAGGGg--GGGGACAGUg -5' |
|||||||
| 17377 | 3' | -59.7 | NC_004367.1 | + | 136889 | 0.7 | 0.485513 |
|
Target: 5'- cCUGugUuuaccGUCCCCCUCCUGUUACc -3' miRNA: 3'- aGACugAccu--CAGGGGGGGGACAGUG- -5' |
|||||||
| 17377 | 3' | -59.7 | NC_004367.1 | + | 119067 | 1.09 | 0.001224 |
|
Target: 5'- gUCUGACUGGAGUCCCCCCCCUGUCACu -3' miRNA: 3'- -AGACUGACCUCAGGGGGGGGACAGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home