Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17378 | 5' | -65 | NC_004367.1 | + | 22330 | 0.68 | 0.41562 |
Target: 5'- cCCCGGUUgaccCCUGaAUGCCCgaGGGAUg -3' miRNA: 3'- cGGGCCGA----GGGCcUACGGGgaCCCUG- -5' |
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17378 | 5' | -65 | NC_004367.1 | + | 55901 | 0.68 | 0.41562 |
Target: 5'- cCCCGGUUgaccCCUGaAUGCCCgaGGGAUg -3' miRNA: 3'- cGGGCCGA----GGGCcUACGGGgaCCCUG- -5' |
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17378 | 5' | -65 | NC_004367.1 | + | 23641 | 0.7 | 0.303947 |
Target: 5'- gGCCCGGC-CgUGGGgcuccaGCCCCggccgUGGGGCu -3' miRNA: 3'- -CGGGCCGaGgGCCUa-----CGGGG-----ACCCUG- -5' |
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17378 | 5' | -65 | NC_004367.1 | + | 121184 | 1.09 | 0.000472 |
Target: 5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3' miRNA: 3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5' |
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17378 | 5' | -65 | NC_004367.1 | + | 127002 | 1.09 | 0.000472 |
Target: 5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3' miRNA: 3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5' |
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17378 | 5' | -65 | NC_004367.1 | + | 129911 | 1.09 | 0.000472 |
Target: 5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3' miRNA: 3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5' |
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17378 | 5' | -65 | NC_004367.1 | + | 124093 | 1.09 | 0.000472 |
Target: 5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3' miRNA: 3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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