miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17380 5' -51.2 NC_004367.1 + 125534 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 116382 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggucAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 3161 0.72 0.826952
Target:  5'- aGUgCAGGGucuuuCCCAGAGucUUCAGGCCa -3'
miRNA:   3'- gCGaGUUCC-----GGGUUUCuaAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 93047 0.73 0.818077
Target:  5'- gCGUUCGGGGCCCAua------AGGCCa -3'
miRNA:   3'- -GCGAGUUCCGGGUuucuaaagUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 129518 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 126609 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 5717 0.69 0.933265
Target:  5'- gGCUgGgcGGGCCCGgaugugacAGGAUcUUCAGGUCc -3'
miRNA:   3'- gCGAgU--UCCGGGU--------UUCUA-AAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 56687 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggucAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 63552 0.73 0.790396
Target:  5'- gCGUUUAAGGCCCuguGAGGUagucucacCAGGCUg -3'
miRNA:   3'- -GCGAGUUCCGGGu--UUCUAaa------GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 123700 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 128443 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 135624 0.69 0.947786
Target:  5'- gCGCUCAgcguGGGCCCuguguaccucAAAGAUcaccccUgGGGCCu -3'
miRNA:   3'- -GCGAGU----UCCGGG----------UUUCUAa-----AgUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 120790 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 23325 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggacAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 104802 0.66 0.991993
Target:  5'- ------cGGCCU-GAGAUUUUAGGCCu -3'
miRNA:   3'- gcgaguuCCGGGuUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 122625 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 57029 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 56989 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 23708 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 95855 0.73 0.790396
Target:  5'- gGCaUCAAGGCCCGAA---UUCuGGCUg -3'
miRNA:   3'- gCG-AGUUCCGGGUUUcuaAAGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.