miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17380 5' -51.2 NC_004367.1 + 101921 0.69 0.933265
Target:  5'- -uUUCAGGGUCUAAAcGUggCAGGCCu -3'
miRNA:   3'- gcGAGUUCCGGGUUUcUAaaGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 104802 0.66 0.991993
Target:  5'- ------cGGCCU-GAGAUUUUAGGCCu -3'
miRNA:   3'- gcgaguuCCGGGuUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 104976 0.75 0.679134
Target:  5'- uGCaCAAGGCCUAAA-AUcUCAGGCCg -3'
miRNA:   3'- gCGaGUUCCGGGUUUcUAaAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 116382 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggucAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 118219 0.66 0.986432
Target:  5'- aGaCUCAaauguagaaGGGCCCAcAGAUUUCAcuCCa -3'
miRNA:   3'- gC-GAGU---------UCCGGGUuUCUAAAGUccGG- -5'
17380 5' -51.2 NC_004367.1 + 120790 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 121951 0.66 0.991993
Target:  5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3'
miRNA:   3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 122625 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 123700 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 124860 0.66 0.991993
Target:  5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3'
miRNA:   3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 125534 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 126609 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 127769 0.66 0.991993
Target:  5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3'
miRNA:   3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 128443 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 129518 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 135624 0.69 0.947786
Target:  5'- gCGCUCAgcguGGGCCCuguguaccucAAAGAUcaccccUgGGGCCu -3'
miRNA:   3'- -GCGAGU----UCCGGG----------UUUCUAa-----AgUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.