miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17383 5' -51.2 NC_004367.1 + 124860 0.66 0.991993
Target:  5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3'
miRNA:   3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 104802 0.66 0.991993
Target:  5'- ------cGGCCU-GAGAUUUUAGGCCu -3'
miRNA:   3'- gcgaguuCCGGGuUUCUAAAGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 127769 0.66 0.991993
Target:  5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3'
miRNA:   3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 121951 0.66 0.991993
Target:  5'- aGCUaCAuuGGaCCCAGGc--UUCAGGCCu -3'
miRNA:   3'- gCGA-GUu-CC-GGGUUUcuaAAGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 118219 0.66 0.986432
Target:  5'- aGaCUCAaauguagaaGGGCCCAcAGAUUUCAcuCCa -3'
miRNA:   3'- gC-GAGU---------UCCGGGUuUCUAAAGUccGG- -5'
17383 5' -51.2 NC_004367.1 + 18065 0.67 0.982722
Target:  5'- gGCUCAGGGCggaacaCCAGGGGUgc--GGCa -3'
miRNA:   3'- gCGAGUUCCG------GGUUUCUAaaguCCGg -5'
17383 5' -51.2 NC_004367.1 + 93001 0.67 0.975791
Target:  5'- gGUUCAAGGCCUugcAGAUguuuuUUCAGcCCu -3'
miRNA:   3'- gCGAGUUCCGGGuu-UCUA-----AAGUCcGG- -5'
17383 5' -51.2 NC_004367.1 + 23669 0.68 0.97016
Target:  5'- gGaCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gC-GAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 135624 0.69 0.947786
Target:  5'- gCGCUCAgcguGGGCCCuguguaccucAAAGAUcaccccUgGGGCCu -3'
miRNA:   3'- -GCGAGU----UCCGGG----------UUUCUAa-----AgUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 101921 0.69 0.933265
Target:  5'- -uUUCAGGGUCUAAAcGUggCAGGCCu -3'
miRNA:   3'- gcGAGUUCCGGGUUUcUAaaGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 5717 0.69 0.933265
Target:  5'- gGCUgGgcGGGCCCGgaugugacAGGAUcUUCAGGUCc -3'
miRNA:   3'- gCGAgU--UCCGGGU--------UUCUA-AAGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 43074 0.7 0.926254
Target:  5'- aCGCUCAAGuacaggcuuagguuGUCCAucAGAgc-CAGGCCg -3'
miRNA:   3'- -GCGAGUUC--------------CGGGUu-UCUaaaGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 116382 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggucAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 56687 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggucAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 23325 0.7 0.922298
Target:  5'- cCGCUC--GGCCCuggacAGGUUcCAGGUCg -3'
miRNA:   3'- -GCGAGuuCCGGGuu---UCUAAaGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 91710 0.7 0.916427
Target:  5'- gCGgaCAAGGCCCug------CAGGCCa -3'
miRNA:   3'- -GCgaGUUCCGGGuuucuaaaGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 43137 0.71 0.883265
Target:  5'- uGCUCGugucuuaccAGGCCCcuAAAGAaucUCAGGCa -3'
miRNA:   3'- gCGAGU---------UCCGGG--UUUCUaa-AGUCCGg -5'
17383 5' -51.2 NC_004367.1 + 3161 0.72 0.826952
Target:  5'- aGUgCAGGGucuuuCCCAGAGucUUCAGGCCa -3'
miRNA:   3'- gCGaGUUCC-----GGGUUUCuaAAGUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 93047 0.73 0.818077
Target:  5'- gCGUUCGGGGCCCAua------AGGCCa -3'
miRNA:   3'- -GCGAGUUCCGGGUuucuaaagUCCGG- -5'
17383 5' -51.2 NC_004367.1 + 95855 0.73 0.790396
Target:  5'- gGCaUCAAGGCCCGAA---UUCuGGCUg -3'
miRNA:   3'- gCG-AGUUCCGGGUUUcuaAAGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.