miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17384 5' -65 NC_004367.1 + 103300 0.66 0.529404
Target:  5'- -aCCGGUuguguuaacuaugUCUaaGGAUGCCCCUGGcGCa -3'
miRNA:   3'- cgGGCCG-------------AGGg-CCUACGGGGACCcUG- -5'
17384 5' -65 NC_004367.1 + 29822 0.66 0.502667
Target:  5'- cGCCCGGC----GGAUcGCCCCgggGuGGACa -3'
miRNA:   3'- -CGGGCCGagggCCUA-CGGGGa--C-CCUG- -5'
17384 5' -65 NC_004367.1 + 55901 0.68 0.41562
Target:  5'- cCCCGGUUgaccCCUGaAUGCCCgaGGGAUg -3'
miRNA:   3'- cGGGCCGA----GGGCcUACGGGgaCCCUG- -5'
17384 5' -65 NC_004367.1 + 22330 0.68 0.41562
Target:  5'- cCCCGGUUgaccCCUGaAUGCCCgaGGGAUg -3'
miRNA:   3'- cGGGCCGA----GGGCcUACGGGgaCCCUG- -5'
17384 5' -65 NC_004367.1 + 129911 1.09 0.000472
Target:  5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3'
miRNA:   3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5'
17384 5' -65 NC_004367.1 + 127002 1.09 0.000472
Target:  5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3'
miRNA:   3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5'
17384 5' -65 NC_004367.1 + 124093 1.09 0.000472
Target:  5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3'
miRNA:   3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5'
17384 5' -65 NC_004367.1 + 121184 1.09 0.000472
Target:  5'- gGCCCGGCUCCCGGAUGCCCCUGGGACc -3'
miRNA:   3'- -CGGGCCGAGGGCCUACGGGGACCCUG- -5'
17384 5' -65 NC_004367.1 + 129703 0.66 0.475647
Target:  5'- uGCCCGGUUCCCuGAaGUCUCagGuGGGCc -3'
miRNA:   3'- -CGGGCCGAGGGcCUaCGGGGa-C-CCUG- -5'
17384 5' -65 NC_004367.1 + 23641 0.7 0.303947
Target:  5'- gGCCCGGC-CgUGGGgcuccaGCCCCggccgUGGGGCu -3'
miRNA:   3'- -CGGGCCGaGgGCCUa-----CGGGG-----ACCCUG- -5'
17384 5' -65 NC_004367.1 + 116631 0.67 0.440789
Target:  5'- cGCCCaGCUCCUGGAgcucccaGCCCaggccaGGACc -3'
miRNA:   3'- -CGGGcCGAGGGCCUa------CGGGgac---CCUG- -5'
17384 5' -65 NC_004367.1 + 56935 0.67 0.440789
Target:  5'- cGCCCaGCUCCUGGAgcucccaGCCCaggccaGGACc -3'
miRNA:   3'- -CGGGcCGAGGGCCUa------CGGGgac---CCUG- -5'
17384 5' -65 NC_004367.1 + 23701 0.67 0.440789
Target:  5'- gGCCCGGC-CgUGGG-GCUCCaggcccggccgUGGGACu -3'
miRNA:   3'- -CGGGCCGaGgGCCUaCGGGG-----------ACCCUG- -5'
17384 5' -65 NC_004367.1 + 23574 0.67 0.440789
Target:  5'- cGCCCaGCUCCUGGAgcucccaGCCCaggccaGGACc -3'
miRNA:   3'- -CGGGcCGAGGGCCUa------CGGGgac---CCUG- -5'
17384 5' -65 NC_004367.1 + 57002 0.66 0.493583
Target:  5'- gGCCCGGC-CgUGGG-GCUCCaggcccggccgUGGGGCu -3'
miRNA:   3'- -CGGGCCGaGgGCCUaCGGGG-----------ACCCUG- -5'
17384 5' -65 NC_004367.1 + 126793 0.66 0.475647
Target:  5'- uGCCCGGUUCCCuGAaGUCUCagGuGGGCc -3'
miRNA:   3'- -CGGGCCGAGGGcCUaCGGGGa-C-CCUG- -5'
17384 5' -65 NC_004367.1 + 123884 0.66 0.475647
Target:  5'- uGCCCGGUUCCCuGAaGUCUCagGuGGGCc -3'
miRNA:   3'- -CGGGCCGAGGGcCUaCGGGGa-C-CCUG- -5'
17384 5' -65 NC_004367.1 + 120975 0.66 0.475647
Target:  5'- uGCCCGGUUCCCuGAaGUCUCagGuGGGCc -3'
miRNA:   3'- -CGGGCCGAGGGcCUaCGGGGa-C-CCUG- -5'
17384 5' -65 NC_004367.1 + 130101 0.66 0.484575
Target:  5'- uCCCGGCcuaaCCGG--GUCCCaGGGGCa -3'
miRNA:   3'- cGGGCCGag--GGCCuaCGGGGaCCCUG- -5'
17384 5' -65 NC_004367.1 + 127192 0.66 0.484575
Target:  5'- uCCCGGCcuaaCCGG--GUCCCaGGGGCa -3'
miRNA:   3'- cGGGCCGag--GGCCuaCGGGGaCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.