Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17385 | 3' | -56 | NC_004367.1 | + | 121872 | 0.7 | 0.689461 |
Target: 5'- cCUGGGGCCUCAGGCccgggaCCCUg-- -3' miRNA: 3'- -GACUCCGGGGUCCGaagaa-GGGAauc -5' |
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17385 | 3' | -56 | NC_004367.1 | + | 124781 | 0.7 | 0.689461 |
Target: 5'- cCUGGGGCCUCAGGCccgggaCCCUg-- -3' miRNA: 3'- -GACUCCGGGGUCCGaagaa-GGGAauc -5' |
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17385 | 3' | -56 | NC_004367.1 | + | 127691 | 0.7 | 0.689461 |
Target: 5'- cCUGGGGCCUCAGGCccgggaCCCUg-- -3' miRNA: 3'- -GACUCCGGGGUCCGaagaa-GGGAauc -5' |
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17385 | 3' | -56 | NC_004367.1 | + | 23612 | 0.68 | 0.814721 |
Target: 5'- gUGGGGCUCCAGGCccgg-CCCa--- -3' miRNA: 3'- gACUCCGGGGUCCGaagaaGGGaauc -5' |
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17385 | 3' | -56 | NC_004367.1 | + | 56973 | 0.68 | 0.814721 |
Target: 5'- gUGGGGCUCCAGGCccgg-CCCa--- -3' miRNA: 3'- gACUCCGGGGUCCGaagaaGGGaauc -5' |
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17385 | 3' | -56 | NC_004367.1 | + | 67986 | 0.67 | 0.848432 |
Target: 5'- -gGAGG-CCCAGGCUUCaagacaCCCgUGGu -3' miRNA: 3'- gaCUCCgGGGUCCGAAGaa----GGGaAUC- -5' |
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17385 | 3' | -56 | NC_004367.1 | + | 72169 | 0.66 | 0.864113 |
Target: 5'- aCUGcAGGgCCCAGGCUg---CCCggucUGGg -3' miRNA: 3'- -GAC-UCCgGGGUCCGAagaaGGGa---AUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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