Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17385 | 5' | -54.2 | NC_004367.1 | + | 124565 | 0.89 | 0.080756 |
Target: 5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 124665 | 1.09 | 0.003869 |
Target: 5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 124764 | 0.92 | 0.0465 |
Target: 5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 124866 | 0.7 | 0.766873 |
Target: 5'- -cCUGAGGGaACuAAGuGGAGGCCUGa -3' miRNA: 3'- caGAUUCCCcUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 124964 | 0.76 | 0.471191 |
Target: 5'- gGUCUAAGGaGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCcCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 125269 | 0.66 | 0.923852 |
Target: 5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3' miRNA: 3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127174 | 0.78 | 0.332222 |
Target: 5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3' miRNA: 3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127274 | 0.89 | 0.080756 |
Target: 5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127374 | 0.89 | 0.080756 |
Target: 5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127474 | 0.89 | 0.080756 |
Target: 5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127574 | 1.09 | 0.003869 |
Target: 5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127674 | 0.92 | 0.0465 |
Target: 5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127775 | 0.7 | 0.766873 |
Target: 5'- -cCUGAGGGaACuAAGuGGAGGCCUGa -3' miRNA: 3'- caGAUUCCCcUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 127873 | 0.76 | 0.471191 |
Target: 5'- gGUCUAAGGaGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCcCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 128178 | 0.66 | 0.923852 |
Target: 5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3' miRNA: 3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 130083 | 0.78 | 0.332222 |
Target: 5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3' miRNA: 3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 130183 | 0.89 | 0.080756 |
Target: 5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 130283 | 0.89 | 0.080756 |
Target: 5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3' miRNA: 3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' |
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17385 | 5' | -54.2 | NC_004367.1 | + | 140564 | 0.66 | 0.923852 |
Target: 5'- gGUUUu-GGGGugGGGGGGGGGuGCCc- -3' miRNA: 3'- -CAGAuuCCCCugUUUCCUCUC-CGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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